Sequence Description Alias PCC hrr AMTR_s00009p00241540 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00009.218 0.9682557093805035 1 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9520214060804589 6 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.9508576215240536 4 AMTR_s00061p00182640 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00061.204 0.9506954699995018 4 AMTR_s00110p00154620 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.130 0.9413148282009381 13 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00079.39 0.9368652865775017 9 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9357822208178075 8 AMTR_s00006p00253660 Cell cycle.organelle machineries.DNA replication.type-Ia DNA topoisomerase evm_27.TU.AmTr_v1.0_scaffold00006.171 0.9335674135803271 8 AMTR_s02193p00008230 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold02193.1 0.9320634278984657 9 AMTR_s00014p00034060 Cell wall.callose.callose synthase evm_27.TU.AmTr_v1.0_scaffold00014.10 0.9317282420634395 29 AMTR_s00003p00263110 Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana 0.9286658339925611 11 AMTR_s00029p00159590 Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.192 0.9286523522707065 12 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9266538876042102 13 AMTR_s04823p00002340 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold04823.1 0.9260206185647132 14 AMTR_s00004p00143390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00004.140 0.9243330245275065 15 AMTR_s00011p00266560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.AEF1 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00011.231 0.9239343985600673 16 AMTR_s00007p00152220 Nucleotide metabolism.purines.salvage pathway.AMP deaminase activities.membrane-associated AMP deaminase evm_27.TU.AmTr_v1.0_scaffold00007.112 0.9235384687738162 17 AMTR_s00057p00188930 GTP-binding protein OBGC, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.204 0.9233998602400252 18 AMTR_s00063p00172440 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00063.53 0.9227778677241749 19 AMTR_s00122p00097060 Solute transport.carrier-mediated transport.BART superfamily.BASS family.BAT 2-keto acid transporter evm_27.TU.AmTr_v1.0_scaffold00122.40 0.9217598896538884 20 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component evm_27.TU.AmTr_v1.0_scaffold00044.9 0.921445685975027 21 AMTR_s00031p00067070 Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana 0.9207804614633387 22 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.918816443443203 23 AMTR_s00197p00040880 Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00197.21 0.9178625001427705 46 AMTR_s00068p00160530 evm_27.TU.AmTr_v1.0_scaffold00068.112 0.9177523473536873 66 AMTR_s00011p00233950 Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana 0.9176484913352043 26 AMTR_s00029p00147240 Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.173 0.9164506679006549 27 AMTR_s00029p00211750 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase evm_27.TU.AmTr_v1.0_scaffold00029.309 0.9164292741552144 28 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9164179979815771 43 AMTR_s00049p00210350 Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.234 0.9159912194726799 30 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9152800798948338 31 AMTR_s00003p00177190 evm_27.TU.AmTr_v1.0_scaffold00003.153 0.9149572270075387 32 AMTR_s00019p00211360 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.platform subcomplex.APC4 component evm_27.TU.AmTr_v1.0_scaffold00019.256 0.9141443867764312 34 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9139045617379619 70 AMTR_s00057p00182130 Acyl-CoA-binding domain-containing protein 6 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00057.193 0.9138919674722498 36 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9118010335939587 37 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9110458445781163 46 AMTR_s00002p00252090 Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana 0.9107049146996617 39 AMTR_s00147p00097570 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00147.54 0.9105479373890163 40 AMTR_s00062p00102370 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP evm_27.TU.AmTr_v1.0_scaffold00062.75 0.9097675169673273 41 AMTR_s00099p00131860 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC4/Tau131 component evm_27.TU.AmTr_v1.0_scaffold00099.119 0.9096056473342448 73 AMTR_s00051p00099980 Protein modification.phosphorylation.TKL kinase superfamily.MLK kinase families.MLK-PP2C kinase evm_27.TU.AmTr_v1.0_scaffold00051.41 0.9095276761625541 43 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component evm_27.TU.AmTr_v1.0_scaffold00009.196 0.9094999536131102 44 AMTR_s00155p00018120 Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00155.7 0.9091510729543765 46 AMTR_s00092p00164660 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.FANCD2 meiotic crossover formation factor evm_27.TU.AmTr_v1.0_scaffold00092.144 0.9073345226450259 71 AMTR_s00099p00147110 evm_27.TU.AmTr_v1.0_scaffold00099.133 0.9070231880965001 98 AMTR_s00085p00089520 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component evm_27.TU.AmTr_v1.0_scaffold00085.48 0.9069288703562527 58 AMTR_s00019p00093260 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.69 0.9060228653757619 51 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.9052295956278877 52 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.9051361389846135 53 AMTR_s00061p00163460 Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.158 0.9049847300564524 54 AMTR_s00092p00052470 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana 0.9049386153615387 55 AMTR_s00053p00190690 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00053.139 0.9043883787102417 56 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.9040348034757273 79 AMTR_s00005p00204930 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component evm_27.TU.AmTr_v1.0_scaffold00005.82 0.9038321220784529 58 AMTR_s00105p00044870 Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00105.19 0.9031000050986779 59 AMTR_s00057p00072880 evm_27.TU.AmTr_v1.0_scaffold00057.43 0.9025617795829473 85 AMTR_s00033p00208970 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00033.183 0.9025256170696768 61 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9018360293781552 62 AMTR_s00175p00056960 Solute transport.carrier-mediated transport.APC superfamily.HAAAP-type aromatic amino acid transporter evm_27.TU.AmTr_v1.0_scaffold00175.29 0.9012896633614103 63 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9008285094634101 64 AMTR_s00045p00210490 evm_27.TU.AmTr_v1.0_scaffold00045.287 0.9008138061099801 65 AMTR_s00019p00219410 evm_27.TU.AmTr_v1.0_scaffold00019.273 0.9002891395257961 91 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9002788536457137 76 AMTR_s00224p00011500 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00224.3 0.9000226056871642 68 AMTR_s00078p00169690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00078.160 0.8997736111528272 69 AMTR_s00055p00224220 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00055.175 0.8993972900359968 70 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.8984916365540694 75 AMTR_s00077p00031710 Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.15 0.8983954559834747 72 AMTR_s00010p00247870 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.340 0.8982374992243454 73 AMTR_s00038p00071780 Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.30 0.8980283103683065 76 AMTR_s00061p00196410 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond evm_27.TU.AmTr_v1.0_scaffold00061.230 0.8972935583274403 77 AMTR_s00176p00043910 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component evm_27.TU.AmTr_v1.0_scaffold00176.18 0.8969225176138703 78 AMTR_s00032p00109160 Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase evm_27.TU.AmTr_v1.0_scaffold00032.70 0.8968827724156423 79 AMTR_s00002p00090480 evm_27.TU.AmTr_v1.0_scaffold00002.47 0.8967825340398442 91 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.896610094144644 82 AMTR_s04975p00003190 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC4/Tau131 component evm_27.TU.AmTr_v1.0_scaffold04975.1 0.8964583395958668 82 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8959715616698791 83 AMTR_s00024p00225420 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.224 0.8955034443954893 85 AMTR_s00101p00112120 Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.85 0.8950238745869776 88 AMTR_s00010p00149200 Phytohormones.auxin.synthesis.indole-3-acetamide (IAM) pathway.indole-3-acetamide hydrolase evm_27.TU.AmTr_v1.0_scaffold00010.107 0.8945965218407688 90 AMTR_s00071p00100010 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00071.77 0.8945316892357071 91 AMTR_s00100p00087410 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00100.26 0.8942756491599798 93 AMTR_s00002p00244810 RNA processing.RNA modification.pseudouridylation.Pus10-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00002.325 0.8939420730393313 94 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.8936869983681677 95 AMTR_s00056p00047160 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.29 0.8936860608790322 96 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.8935380861729919 98 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8924286813446658 99 AMTR_s00062p00213230 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana 0.8922207628087142 100