Sequence Description Alias PCC hrr AMTR_s00027p00237750 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.COP10-DET1 (CDD) subcomplex.DET1 regulator component evm_27.TU.AmTr_v1.0_scaffold00027.131 0.938891125509655 1 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase evm_27.TU.AmTr_v1.0_scaffold00083.7 0.932062116359543 2 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.9318689640924402 6 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9307329018146526 4 AMTR_s00066p00130420 Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.123 0.9299821794136393 5 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9298286343018883 6 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9281600077719561 8 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.9246373956510607 8 AMTR_s00065p00020910 Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.6 0.9219996693746645 9 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9207944475995058 13 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.9169490701131974 11 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9151309914227808 12 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase evm_27.TU.AmTr_v1.0_scaffold00016.149 0.9107888363103231 13 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9098897071706457 32 AMTR_s00049p00163880 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.150 0.9081704256599744 15 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9073089435188858 46 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9068087050678953 54 AMTR_s00002p00234380 evm_27.TU.AmTr_v1.0_scaffold00002.271 0.9061472554093518 18 AMTR_s00012p00252270 evm_27.TU.AmTr_v1.0_scaffold00012.259 0.9061198009002799 19 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.9049081701652625 29 AMTR_s00022p00253450 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase evm_27.TU.AmTr_v1.0_scaffold00022.400 0.9031016820814459 21 AMTR_s00036p00227770 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component evm_27.TU.AmTr_v1.0_scaffold00036.169 0.9030323475311802 35 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.9028995526790918 23 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.902513688798418 24 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00203.3 0.9021492105973878 25 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9018614061287148 37 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.9017184246908923 27 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.9015302214460221 28 AMTR_s00058p00057440 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00058.26 0.9014025213497134 29 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9012682769832918 59 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8983343038417242 33 AMTR_s00039p00132380 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00039.90 0.8973025217960121 32 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.8968462675010916 33 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.894616757533589 43 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.8943727892154958 65 AMTR_s00102p00142950 evm_27.TU.AmTr_v1.0_scaffold00102.75 0.8934814457371398 36 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.893238324449106 42 AMTR_s00012p00251230 evm_27.TU.AmTr_v1.0_scaffold00012.252 0.8926366743869 38 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8919530961822536 43 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8908380003772111 98 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.8908379086070326 54 AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.8897858143249346 68 AMTR_s00058p00186720 Protein KINESIN LIGHT CHAIN-RELATED 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.182 0.8890023628910566 45 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8882304670270195 50 AMTR_s00046p00227230 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.167 0.8881228692892169 48 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8878620957470214 49 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase evm_27.TU.AmTr_v1.0_scaffold00060.3 0.8830660951888778 54 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.8824759078271337 56 AMTR_s00045p00149950 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.161 0.8824219808670833 61 AMTR_s00007p00268660 evm_27.TU.AmTr_v1.0_scaffold00007.394 0.8819330723028809 58 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase evm_27.TU.AmTr_v1.0_scaffold00167.23 0.881709728400617 59 AMTR_s00004p00026400 Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.10 0.8816213876740314 60 AMTR_s00156p00067780 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00156.36 0.8802598560003116 62 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.8790524059167134 66 AMTR_s00062p00168550 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cocos nucifera evm_27.TU.AmTr_v1.0_scaffold00062.161 0.8781570109043163 67 AMTR_s00047p00085560 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO-type) evm_27.TU.AmTr_v1.0_scaffold00047.33 0.8780461388485581 68 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8777060999037773 78 AMTR_s00340p00004320 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mCSF splicing factor evm_27.TU.AmTr_v1.0_scaffold00340.1 0.8777018128184076 71 AMTR_s00088p00159600 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00088.130 0.8776147175550525 72 AMTR_s00142p00033030 MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00142.14 0.8767093727808299 73 AMTR_s00149p00067630 Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00149.44 0.8763045496553524 74 AMTR_s00019p00039970 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.19 0.8761369427375776 75 AMTR_s00046p00160890 RNA biosynthesis.transcriptional activation.BSD transcription factor evm_27.TU.AmTr_v1.0_scaffold00046.85 0.8761232753007978 76 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.8758091088696084 77 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8757239675751096 92 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.8753440420989693 89 AMTR_s00049p00149530 Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.131 0.8751516868525772 80 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8751220468554084 81 AMTR_s00066p00107860 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.94 0.8742495669095653 84 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00085.65 0.8737627018908626 87 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8732849056096453 88 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.8732241709249705 90 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.8730060511064702 92 AMTR_s00007p00210400 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00007.191 0.8724152450073612 95 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8724118408701447 99 AMTR_s00149p00064300 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00149.41 0.8720281513563259 97 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8720192775535506 98 AMTR_s00030p00088210 RNA biosynthesis.transcriptional activation.Trihelix transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.34 0.871640798687467 99 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.871515032674376 100