Sequence Description Alias PCC hrr AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9626766053314618 1 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.9614638662557036 2 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9605853669410095 3 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component evm_27.TU.AmTr_v1.0_scaffold00029.338 0.9548566459452293 4 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.9545949449344368 5 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9543957906593487 6 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor evm_27.TU.AmTr_v1.0_scaffold00109.135 0.9513309150461824 7 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9504569638874578 8 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9439471436957583 9 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.9430971152212364 10 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.9410202172372003 11 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.940784402361149 12 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9390039244632261 13 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.9361499871216682 14 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9350981803288991 15 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.9343241176799533 16 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.9331294193500493 17 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9312924490478377 18 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9310459234529661 19 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.9300146064427846 20 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase evm_27.TU.AmTr_v1.0_scaffold00016.69 0.929586134944075 30 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.9294671103325188 22 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.9276928177129704 23 AMTR_s00135p00058090 Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00135.24 0.9270053247095725 24 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor evm_27.TU.AmTr_v1.0_scaffold00059.198 0.9267239087909431 25 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein evm_27.TU.AmTr_v1.0_scaffold00039.114 0.9258456304179615 26 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00003.202 0.9254956047297496 27 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9254918527465419 28 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase evm_27.TU.AmTr_v1.0_scaffold00065.18 0.9246415149655413 29 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) evm_27.TU.AmTr_v1.0_scaffold00002.507 0.9238376405251516 30 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.92345146148098 31 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00032.84 0.9196543166710592 32 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9190025975480373 33 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.9167155290665633 34 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9159743978571626 35 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase evm_27.TU.AmTr_v1.0_scaffold00126.53 0.9151093737961066 36 AMTR_s00109p00140320 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00109.150 0.9149251202699095 37 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.9147390540969766 38 AMTR_s00107p00020160 Redox homeostasis.chloroplast redox homeostasis.NADPH-dependent thioredoxin reductase evm_27.TU.AmTr_v1.0_scaffold00107.3 0.9142696438954367 39 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.9139123393017884 40 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component evm_27.TU.AmTr_v1.0_scaffold00010.88 0.9138240683062893 41 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.9137054285974173 42 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9129206510505316 58 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00110.17 0.9119303363988284 44 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9109375073869289 46 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.6 0.9102891721594036 46 AMTR_s00003p00105430 Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00003.71 0.909636163117486 47 AMTR_s00022p00242310 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.351 0.9095635554804963 48 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00002.494 0.9092314942431641 49 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.90839788110597 50 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00025.394 0.9074624515837079 51 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.9066916343743238 52 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00016.120 0.9062723423970619 53 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9059212399190892 54 AMTR_s00078p00063510 Photosynthesis.calvin cycle.phosphopentose epimerase evm_27.TU.AmTr_v1.0_scaffold00078.34 0.9055523589554596 55 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component evm_27.TU.AmTr_v1.0_scaffold00013.7 0.904862140188034 56 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component evm_27.TU.AmTr_v1.0_scaffold00061.187 0.903993712571273 57 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9037345801182135 60 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.9023015435733873 59 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.901716829683821 60 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.9012458672722226 61 AMTR_s00011p00136520 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP8/TAC6 component evm_27.TU.AmTr_v1.0_scaffold00011.39 0.9011855913950889 62 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component evm_27.TU.AmTr_v1.0_scaffold00003.203 0.9003133434291448 63 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component evm_27.TU.AmTr_v1.0_scaffold00016.38 0.9002082785710345 64 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.9001853645942873 65 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9001225680632163 66 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.8998586906187371 67 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor evm_27.TU.AmTr_v1.0_scaffold00149.10 0.8991827617462054 68 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.8978798762661945 69 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8977028273778296 70 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.8975232028350462 71 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor evm_27.TU.AmTr_v1.0_scaffold00049.26 0.8970104170928236 72 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.896352259664018 73 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00010.221 0.896234364986109 74 AMTR_s00058p00152490 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.phosphorylation/dephosphorylation.PPH1/TAP38 phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.124 0.8960964105202 75 AMTR_s00030p00231690 evm_27.TU.AmTr_v1.0_scaffold00030.187 0.8959287204855818 76 AMTR_s00012p00241210 Uncharacterized protein At5g02240 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.216 0.8954633007489693 77 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.8954006131335082 78 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome evm_27.TU.AmTr_v1.0_scaffold00126.1 0.8950860954951891 79 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8943585909229361 80 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8937642443779444 81 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8924541406967041 96 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8913217171321468 84 AMTR_s00092p00167540 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond evm_27.TU.AmTr_v1.0_scaffold00092.149 0.8910107749001723 85 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase evm_27.TU.AmTr_v1.0_scaffold00029.342 0.890689355530517 86 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00007.32 0.8892967654691789 87 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.8890837443765304 88 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.889046680251822 89 AMTR_s00107p00109770 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH4/11 component evm_27.TU.AmTr_v1.0_scaffold00107.33 0.8884679997659164 90 AMTR_s00025p00151950 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.171 0.8879059749822494 91 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00016.302 0.887164863010194 92 AMTR_s00053p00151810 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond evm_27.TU.AmTr_v1.0_scaffold00053.99 0.886835263208614 93 AMTR_s00003p00201470 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS17 component evm_27.TU.AmTr_v1.0_scaffold00003.188 0.8866047973170897 94 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase evm_27.TU.AmTr_v1.0_scaffold00152.29 0.8864437986491454 95 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component evm_27.TU.AmTr_v1.0_scaffold00065.208 0.8858481992062137 96 AMTR_s00039p00224840 evm_27.TU.AmTr_v1.0_scaffold00039.204 0.8844682638928039 97 AMTR_s00006p00263760 Disease resistance protein RPM1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.255 0.8840227779733291 98 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8838548622644656 99 AMTR_s00164p00068000 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00164.30 0.883765416859481 100