Sequence Description Alias PCC hrr Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.9415672402844408 5 Smo91321 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 0.9371296067401446 2 Smo12954 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 0.9364156059247382 3 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.9344896233278511 5 Smo90520 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PYG7 protein 0.9183801269573064 6 Smo47118 0.9161045315367465 6 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.9138018196444605 7 Smo156007 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component 0.9091557586537227 8 Smo447828 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana 0.9079847759528324 13 Smo439600 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.907363054541823 18 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.9064455564061238 24 Smo407721 Translation factor GUF1 homolog, chloroplastic OS=Oryza sativa subsp. japonica 0.9032222275760315 12 Smo270181 0.9017771031533107 13 Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 0.9009624395998711 26 Smo92083 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana 0.9005989613833502 20 Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.8987012611450781 32 Smo153292 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component 0.8985018208026695 17 Smo416844 0.898158189773664 18 Smo177598 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) 0.897093966306373 19 Smo93752 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein 0.8956893312137438 25 Smo128521 Photosynthesis.photophosphorylation.ATP synthase complex.assembly.CGL160 factor 0.8950651414874419 21 Smo75404 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter 0.8947198966169286 22 Smo74924 0.8937858131869696 23 Smo154280 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase 0.892342269045244 39 Smo26412 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana 0.8916097815578394 28 Smo403724 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.8896815799610315 26 Smo409004 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.8890153343596133 34 Smo80789 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 158.0) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8886781895716769 28 Smo413295 Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana 0.8880247338658422 29 Smo118724 0.8878488261070252 39 Smo438805 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component 0.8855603997351893 41 Smo80721 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.8822184504481316 32 Smo77541 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana 0.8813894337234951 33 Smo109632 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.ndhA-specific mRNA splicing factor 0.8800844417222402 34 Smo440741 0.878775856569767 35 Smo438647 Multi-process regulation.circadian clock.TOC1 evening oscillator component 0.8780046967349988 36 Smo81522 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component 0.8749417957734504 52 Smo95815 Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana 0.8734937520964682 38 Smo440740 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase 0.8733868463197428 43 Smo172681 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase 0.8723753120954045 60 Smo430784 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component 0.8700556309192344 48 Smo75698 GTPase ERA1, chloroplastic OS=Zea mays 0.8687189862772282 64 Smo271998 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.8685934213874675 43 Smo110000 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8684254986793386 44 Smo418636 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC13 component 0.8684079330124741 54 Smo11301 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica 0.8674585813164024 73 Smo164801 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE 0.8658280182024884 77 Smo20706 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.8650688226439123 97 Smo166773 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana 0.8647330458548608 75 Smo442726 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) 0.8639636287212931 55 Smo82310 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP 0.8637216775270502 51 Smo83448 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor 0.8619035098909551 53 Smo173467 Phytohormones.strigolactone.synthesis.DWARF27 biosynthesis protein 0.8612589045326996 54 Smo168153 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein 0.859933537371815 56 Smo79664 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase 0.8576881405255674 76 Smo45172 RNA processing.RNA modification.pseudouridylation.RsuA-type rRNA pseudouridine synthase 0.8555460914294525 58 Smo73828 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana 0.855530062082111 69 Smo64370 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor 0.8536430317122496 93 Smo75120 Protein root UVB sensitive 5 OS=Arabidopsis thaliana 0.8533914418829559 61 Smo142751 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica 0.8531785807074448 62 Smo85469 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) 0.851624131774282 67 Smo78010 Protein modification.protein folding and quality control.protein folding catalyst activities.TF nascent polypeptide chaperone 0.850920588682996 79 Smo442087 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor 0.8503500482911348 65 Smo405767 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana 0.8502708664631403 76 Smo88014 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase 0.8493606929984399 67 Smo71323 Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana 0.8471531016447987 68 Smo73985 RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana 0.8466069632653015 81 Smo442872 0.8461204996757675 95 Smo12282 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.8457992597008576 72 Smo164227 Putative nitric oxide synthase OS=Oryza sativa subsp. japonica 0.8451915150029883 73 Smo403998 0.8450375742294575 74 Smo146971 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase 0.8441531616803722 75 Smo148310 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component 0.8432946628152185 77 Smo117159 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor 0.8429984713433419 78 Smo130412 OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.8393419050912833 82 Smo443419 0.8393177379746545 83 Smo76023 UPF0235 protein At5g63440 OS=Arabidopsis thaliana 0.8391344782957555 84 Smo152047 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome 0.838186854140154 97 Smo99919 0.8375537644579688 86 Smo103638 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana 0.8369223427911016 87 Smo141109 0.8366803018141059 88 Smo52692 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana 0.8353659067540702 89 Smo102611 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease 0.8353178165422076 91 Smo170457 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 134.6) 0.8351493189038401 91 Smo405512 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component 0.8350166013966104 92 Smo85410 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana 0.8342588926134648 93 Smo135281 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana 0.8339214210415951 94 Smo418465 0.8321555439534353 95 Smo405094 Elongation factor G-2, chloroplastic OS=Glycine max 0.8315444651686851 96 Smo67117 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpP1/3-6 proteolytic core component 0.8311622476200607 97 Smo58058 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 0.830209788788577 98 Smo439181 0.8301339303374834 99