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  5. Solyc00g020020.2.1

Solyc00g020020.2.1


Description : no hits & (original description: none)


Gene families : OG0004265 (Archaeplastida) Phylogenetic Tree(s): OG0004265_tree ,
OG_05_0003478 (LandPlants) Phylogenetic Tree(s): OG_05_0003478_tree ,
OG_06_0002787 (SeedPlants) Phylogenetic Tree(s): OG_06_0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc00g020020.2.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
ATCG00500 ACCD acetyl-CoA carboxylase carboxyl transferase subunit beta 0.09 Archaeplastida
Gb_03850 No alias carboxyltransferase subunit beta of polymeric acetyl-CoA... 0.05 Archaeplastida
Gb_06828 No alias large subunit of ribulose-1,5-bisphosphat... 0.06 Archaeplastida
Gb_06829 No alias carboxyltransferase subunit beta of polymeric acetyl-CoA... 0.04 Archaeplastida
Gb_09759 No alias Enzyme classification.EC_6 ligases.EC_6.4 ligase forming... 0.06 Archaeplastida Sequence Description Alias PCC hrr Smo113824 Protein modification.phosphorylation.CK kinase superfamily.CKL protein kinase 0.8883780827736952 54 Smo110102 0.8803656951020783 54 Smo448937 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-14 motor protein 0.8739342365774609 72 Smo443606 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase 0.8702503477212578 4 Smo446951 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein 0.8598942755917565 85 Smo169724 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-14 motor protein 0.8580084398025669 35 Smo52690 0.8569137675719576 21 Smo86110 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.8525135061651159 55 Smo100267 0.8515176073945728 81 Smo80232 Solute transport.carrier-mediated transport.CLC anion channel / anion:proton antiporter 0.8513914045149616 84 Smo267628 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica 0.8481906108446369 56 Smo87970 Cell wall.pectin.rhamnogalacturonan II.synthesis.1,3-alpha-D-xylosyltransferase 0.8455769034582202 40 Smo10140 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.RecQ4A helicase component 0.8455503939428612 41 Smo439915 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor 0.8441069513702993 73 Smo77018 Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica 0.8437456821497004 75 Smo46231 Cell cycle.organelle machineries.DNA replication.RNA primer removal.plastidial exonuclease 0.8425610437033608 48 Smo97243 RNA processing.ribonuclease activities.RNase Z endoribonuclease 0.8412828408768618 52 Smo432680 0.8405739027222943 55 Smo173646 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase guanyl-nucleotide exchange factor (ARF-GEF) activities.BIG-type ARF-GEF factor 0.836994439983525 98 Smo163891 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor 0.8308740426377684 91 Smo437244 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).Augmin gamma-TuRC recruiting complex.AUG6 component 0.8297812559664506 83 Smo174818 0.8250329329705245 91 Smo442814 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting PHD protein (VIN3,VRN5) 0.8246401959902567 94