Sequence Description Alias PCC hrr Smo181800 0.9645986678494882 1 Smo76814 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic56 component 0.950497627129222 2 Smo405878 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL3 lysine-specific demethylase 0.9488684465381511 13 Smo121150 0.9410663100404811 4 Smo415636 0.9383434891514862 5 Smo98591 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana 0.9381241623452027 6 Smo406265 0.9364834348691963 7 Smo444050 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor 0.9332009857186839 22 Smo31929 Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana 0.9304152231886067 9 Smo88014 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase 0.9304056614558847 10 Smo164675 Chromatin organisation.histone chaperone activities.SPT6-type histone chaperone 0.9298528547662285 31 Smo175555 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase 0.9297490504620148 17 Smo409004 Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana 0.9293384540393375 13 Smo89990 Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana 0.929152568551419 14 Smo437689 Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica 0.9267480505789543 27 Smo156135 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease 0.9265876714160516 16 Smo20706 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays 0.9263926796764718 17 Smo439163 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein 0.9256520727682561 18 Smo438142 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) 0.9246910673180356 19 Smo86139 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC3 component 0.9226413761130807 28 Smo402861 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component 0.9220696410990427 22 Smo115678 Protein translocation.peroxisome.importomer translocation system.receptor export system.Pex1-Pex6 subcomplex.Pex1 component 0.9217284024993752 22 Smo173562 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component 0.9216228769427525 49 Smo163635 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC1/Tau95 component 0.9211158715036536 24 Smo439642 0.9199050152422907 25 Smo437286 0.9197076948424331 26 Smo104811 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.PTB-type splicing factor 0.9195534157972339 27 Smo173767 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.9194100642835771 41 Smo177985 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor 0.9189335930057251 67 Smo79851 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase 0.9184706875340102 30 Smo437976 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor 0.9182161078660083 31 Smo407119 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component 0.9178042918501977 34 Smo442417 0.9158097057409672 66 Smo180368 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor 0.9151304745465151 51 Smo91982 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease 0.9146747145808953 35 Smo167519 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.9146421020664728 36 Smo186974 tRNA ligase 1 OS=Arabidopsis thaliana 0.9122020084705715 37 Smo166773 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana 0.911935381331314 38 Smo424372 Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana 0.9115235862743003 39 Smo440913 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin 0.910791541590253 40 Smo446942 Protein EMSY-LIKE 3 OS=Arabidopsis thaliana 0.9106493062334201 41 Smo96586 0.9096764086836712 42 Smo438275 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor 0.9096108468837065 43 Smo60640 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor 0.9092277228614262 81 Smo73828 Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana 0.9091251894568592 45 Smo440740 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase 0.9090391925408986 46 Smo440582 ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana 0.9086964541938957 47 Smo109207 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase 0.9084313659213319 48 Smo437336 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana 0.9083887910796249 49 Smo169856 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana 0.9081496988829575 52 Smo440060 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.9073666122034318 51 Smo166434 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana 0.9071434428784328 52 Smo437796 0.9070876971137611 53 Smo440240 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase 0.9058204434726217 54 Smo445658 Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana 0.9046694006827375 85 Smo175826 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana 0.9038913768794656 56 Smo444750 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component 0.9035208558405482 57 Smo409804 ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana 0.9031183577576918 58 Smo76216 Protein modification.phosphorylation.STE kinase superfamily.MAP3K-MEKK kinase 0.90288107654651 59 Smo150233 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF-QO electron transfer flavoprotein-ubiquinone oxidoreductase 0.9017805648302146 60 Smo11301 DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica 0.9015555435531127 61 Smo406615 0.9015026410538461 62 Smo91298 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VII/NDR kinase 0.9009680281103699 63 Smo181271 Phosphoinositide phosphatase SAC7 OS=Arabidopsis thaliana 0.9006082337483814 64 Smo420183 RNA biosynthesis.transcriptional activation.Trihelix transcription factor 0.9001364680140417 65 Smo437710 0.899660330146357 66 Smo443962 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase 0.8996334740062992 92 Smo92242 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor 0.8988670471671405 68 Smo82731 0.8987580911166088 69 Smo153292 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component 0.8986416489656024 70 Smo160385 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor complex.large subunit 0.8984380901030365 71 Smo414202 RNA biosynthesis.transcriptional activation.HUA2 transcription factor 0.89796087826047 72 Smo439455 0.8979579941903864 73 Smo62387 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana 0.8976640575502014 74 Smo92017 Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIV-type starch synthase 0.8965571295104222 75 Smo442673 Nutrient uptake.iron uptake.iron storage.PIC-type iron transporter 0.8963559866665585 76 Smo106157 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana 0.8957398532220601 77 Smo417312 Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana 0.8955811321970188 78 Smo79402 0.8951782840081133 79 Smo428406 Cell cycle.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.EME1 component 0.8946827335000253 81 Smo96808 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG6-type DNA ligase 0.8936095933055075 82 Smo46232 Cell cycle.organelle machineries.DNA replication.RNA primer removal.plastidial exonuclease 0.893385173494272 83 Smo413675 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana 0.893370818758503 84 Smo132867 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.bifunctional hydroxymethylpyrimidine kinase and thiamin-phosphate diphosphorylase (Th1) 0.8928291328876498 86 Smo106218 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme 0.8918220537689078 87 Smo231207 Laccase-13 OS=Oryza sativa subsp. japonica 0.891772610130849 88 Smo79650 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase 0.8912686181864051 89 Smo91321 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 0.8908192242437738 90 Smo402586 0.8907023982621305 91 Smo172681 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamate-tRNA ligase 0.8904131634553966 92 Smo440912 0.8897874022420822 93 Smo166436 Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana 0.8891992650520445 95 Smo105247 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana 0.8889644905992171 96 Smo439355 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase 0.8889522419740568 97 Smo75592 0.8887635032246674 98 Smo404055 RNA biosynthesis.transcriptional activation.HUA2 transcription factor 0.8879498254751899 99 Smo446291 0.8873284697253648 100