Sequence Description Alias PCC hrr Smo419303 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase 0.9560144936482315 1 Smo12282 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.9535476704218497 2 Smo80721 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.9495898635146209 3 Smo93752 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein 0.9480440142116828 4 Smo448320 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana 0.9432700592790785 5 Smo271353 Coenzyme metabolism.NAD/NADP biosynthesis.de-novo pathway.quinolinate phosphoribosyl transferase 0.9355569461920583 6 Smo77276 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana 0.9324191069825724 7 Smo418636 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC13 component 0.9292193728269555 8 Smo152047 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome 0.9277164537039356 15 Smo146971 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase 0.9234894781324435 10 Smo103517 Phytohormones.gibberellin.synthesis.ent-kaurene oxidase 0.9227363491998328 11 Smo270688 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component 0.9195786358957425 12 Smo438182 0.9151316565951999 13 Smo135281 Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana 0.9145130347754186 14 Smo102611 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease 0.9122900355947816 24 Smo168153 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein 0.9120290824027549 16 Smo402209 0.9069578011239937 17 Smo406852 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 164.1) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.9047803751816311 23 Smo430412 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.9043763399272106 19 Smo105805 Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana 0.9036855338516078 20 Smo403724 DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana 0.9021531246399461 21 Smo430784 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component 0.8985870607947433 22 Smo84784 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.897973636926309 24 Smo447716 0.897615675183224 24 Smo152929 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component 0.8947058706290048 32 Smo429547 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Ris1 chromatin remodeling factor 0.8941980621364948 26 Smo84658 Chromatin organisation.histone modifications.histone acetylation.MYST-type histone acetyltransferase 0.8923294213363954 27 Smo143057 0.8914712198859444 28 Smo74924 0.8912569044148896 29 Smo85032 Alpha-galactosidase 3 OS=Arabidopsis thaliana 0.8890035719837606 30 Smo61778 0.8862680279757061 31 Smo75404 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter 0.8858766621588177 32 Smo416844 0.8832697528565613 33 Smo407721 Translation factor GUF1 homolog, chloroplastic OS=Oryza sativa subsp. japonica 0.8825686938497032 34 Smo58058 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana 0.8823914130119928 35 Smo442087 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor 0.8809791174060225 36 Smo439153 0.8788160032787634 38 Smo52692 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana 0.8787192566928629 38 Smo425390 0.8784494732588572 39 Smo177598 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) 0.8782688221578845 40 Smo418465 0.877960893858462 44 Smo443419 0.8777621955635289 42 Smo83448 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor 0.8769283525893732 43 Smo141109 0.8754869619985539 44 Smo442094 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component 0.8733798111387331 45 Smo442872 0.8729673006913728 46 Smo438805 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component 0.8714705152129952 57 Smo128521 Photosynthesis.photophosphorylation.ATP synthase complex.assembly.CGL160 factor 0.870709080682012 48 Smo170457 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 134.6) 0.8704935439169272 49 Smo172755 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-IV kinase 0.8691418934199057 50 Smo440740 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase 0.8687694833657108 51 Smo81522 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH12 component 0.8677474810506796 65 Smo75698 GTPase ERA1, chloroplastic OS=Zea mays 0.8657062845819059 71 Smo146755 0.8639636287212931 55 Smo164801 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE 0.8633871112642895 81 Smo26412 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana 0.8633319277071922 81 Smo73844 0.8631570966392226 58 Smo447679 Leucine-rich repeat-containing protein ODA7 OS=Chlamydomonas reinhardtii 0.8629064127535995 59 Smo442385 Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana 0.8621939628404136 60 Smo445274 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst 0.8618316378925127 61 Smo170091 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 0.8602808096064561 62 Smo271998 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica 0.8602594051642699 63 Smo438647 Multi-process regulation.circadian clock.TOC1 evening oscillator component 0.8600251349406992 64 Smo163827 Beta-glucosidase 25 OS=Oryza sativa subsp. japonica 0.8588334604172977 65 Smo118724 0.858743011002275 86 Smo78010 Protein modification.protein folding and quality control.protein folding catalyst activities.TF nascent polypeptide chaperone 0.8583347024769745 67 Smo403334 DNA damage response.DNA repair polymerase activities.DNA polymerase kappa (POLK) 0.8583054577567829 68 Smo117159 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor 0.8581054109270083 69 Smo405767 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana 0.858020162868995 70 Smo77541 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana 0.8568123158645087 71 Smo405512 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component 0.8548574313358274 73 Smo80789 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 158.0) & Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum 0.8529669004016815 74 Smo439181 0.8525441508485959 75 Smo89270 Putative GTP diphosphokinase RSH1, chloroplastic OS=Oryza sativa subsp. japonica 0.8510363122329596 76 Smo423505 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor 0.8510003252614755 77 Smo173467 Phytohormones.strigolactone.synthesis.DWARF27 biosynthesis protein 0.8508102926017462 78 Smo12954 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component 0.8498102703128898 79 Smo130412 OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana 0.8494276496765315 80 Smo128787 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NYC1 component 0.8493534715456783 81 Smo30598 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana 0.8488709716451753 89 Smo91298 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VII/NDR kinase 0.8483888929636452 84 Smo84550 SH2 domain-containing protein A OS=Arabidopsis thaliana 0.8461521103456818 85 Smo77583 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.MSH1 factor 0.8450991627740844 86 Smo67117 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpP1/3-6 proteolytic core component 0.8434320890252266 87 Smo228619 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase 0.8418827576066933 88 Smo141010 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor 0.841842560618626 89 Smo90520 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.PYG7 protein 0.8415941945793329 90 Smo404255 Leucine-rich repeat-containing protein ODA7 OS=Chlamydomonas reinhardtii 0.8402591165772778 91 Smo148310 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpP2 proteolytic component 0.8398716013177505 92 Smo136585 Chaperone protein dnaJ C76, chloroplastic OS=Arabidopsis thaliana 0.8385339990858308 93 Smo164116 0.8376891272832511 94 Smo174928 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.pheophorbide a oxygenase (PAO) 0.8350398934470226 95 Smo418519 0.8336907861187821 97 Smo94171 Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase 0.8326488725567501 100