Sequence Description Alias PCC hrr AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.952028661495498 1 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9384610125425369 8 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9360411327738627 5 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.9332528684759429 4 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9312159329406959 5 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein evm_27.TU.AmTr_v1.0_scaffold00045.260 0.9307608600229675 6 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.9294819686529678 7 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9243467050262603 9 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9222615505296453 27 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.921127817621508 38 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9207774524232658 12 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.920546387025136 12 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9167360923616277 78 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9153025134874705 18 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9150586238192542 36 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9128168973895568 50 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9122561127725739 17 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9120108537525817 42 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.9119514830694426 19 AMTR_s00006p00036530 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.9 0.9100681137040932 20 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9096725995729285 30 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.9094249095918565 22 AMTR_s00071p00184210 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.189 0.9088660765405738 23 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.9088619097900976 24 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00110.101 0.9087677854438833 25 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9062440619123507 53 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9060124236328275 38 AMTR_s00165p00016900 evm_27.TU.AmTr_v1.0_scaffold00165.3 0.905006137091536 29 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.9046422008841422 30 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.9046166917773542 31 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.904505821530941 55 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.904383712827674 33 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.9034616434836039 34 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.9030384798793677 35 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9030053587494157 36 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.901855750572567 59 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.9015136403602886 38 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9012819472132296 54 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9003280140323847 41 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.9002563069342807 42 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9001308779508509 43 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8984519161441543 45 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.8975816097241626 59 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8973060063967186 78 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.8967550955871075 80 AMTR_s00012p00228300 Factor of DNA methylation 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.179 0.8967245066274201 49 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.160 0.8964233340106416 50 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.896421767724684 51 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.896217146672909 58 AMTR_s00106p00104330 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00106.74 0.8960257551439581 54 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.8938623176198645 54 AMTR_s00032p00018130 Obg-like ATPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.3 0.8936989993993149 94 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.8936723195653894 65 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.8935031728455092 59 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.893217383910674 60 AMTR_s00090p00120760 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00090.59 0.8930392195660171 61 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.8927759988928068 97 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.8925369280849924 63 AMTR_s00069p00137820 evm_27.TU.AmTr_v1.0_scaffold00069.102 0.8916349587942709 64 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.8901961337986154 65 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.8898416282524995 67 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.8895763706003387 68 AMTR_s00058p00109040 evm_27.TU.AmTr_v1.0_scaffold00058.63 0.8889504992005968 69 AMTR_s00012p00252270 evm_27.TU.AmTr_v1.0_scaffold00012.259 0.8886252932261924 70 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.888012889791524 72 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.8879935971345021 73 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.8874458676917363 81 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8853181773828301 78 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8842378847981069 95 AMTR_s00077p00042300 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00077.24 0.8839194499274656 81 AMTR_s00022p00127120 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.118 0.8833257033366627 82 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.8829143130015221 83 AMTR_s00058p00181770 Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00058.172 0.8812639166594358 87 AMTR_s00026p00039130 evm_27.TU.AmTr_v1.0_scaffold00026.13 0.8810491558782861 90 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase evm_27.TU.AmTr_v1.0_scaffold00004.78 0.8809995984050383 91 AMTR_s00049p00169350 Protein STICHEL-like 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.158 0.8806704677370506 94 AMTR_s00103p00070570 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor evm_27.TU.AmTr_v1.0_scaffold00103.36 0.8799252470767416 95 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00062.184 0.8792272933258559 96 AMTR_s00032p00233500 Protein modification.phosphorylation.CMGC kinase superfamily.CLK/LAMMER kinase evm_27.TU.AmTr_v1.0_scaffold00032.261 0.8786042348949468 97 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.8782033227982744 99 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8771694935956514 100