Sequence Description Alias PCC hrr AMTR_s00110p00053630 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin evm_27.TU.AmTr_v1.0_scaffold00110.24 0.973933537374958 3 AMTR_s00033p00026050 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) evm_27.TU.AmTr_v1.0_scaffold00033.11 0.9581038945099111 2 AMTR_s00106p00133350 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component evm_27.TU.AmTr_v1.0_scaffold00106.104 0.9570778083797303 3 AMTR_s00077p00115750 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00077.105 0.9569801997451794 6 AMTR_s00126p00106330 Vesicle trafficking.autophagosome formation.ATG9-2-18 membrane shuttling complex.ATG2 component evm_27.TU.AmTr_v1.0_scaffold00126.49 0.9546841376854287 5 AMTR_s00029p00206820 RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component evm_27.TU.AmTr_v1.0_scaffold00029.298 0.9529942210285205 6 AMTR_s00111p00138070 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00111.118 0.9522484023220373 7 AMTR_s00002p00271990 evm_27.TU.AmTr_v1.0_scaffold00002.653 0.950047132790325 21 AMTR_s00025p00188660 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) evm_27.TU.AmTr_v1.0_scaffold00025.230 0.9488159368124063 9 AMTR_s00007p00267150 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP107 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00007.380 0.9473311500918439 10 AMTR_s00059p00194330 evm_27.TU.AmTr_v1.0_scaffold00059.216 0.9463151012817079 29 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9433693773544835 24 AMTR_s00033p00039610 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.16 0.943274241634093 18 AMTR_s00022p00045270 evm_27.TU.AmTr_v1.0_scaffold00022.25 0.9428910758605822 14 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9426335066876715 15 AMTR_s00048p00149840 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.102 0.9410252232094003 16 AMTR_s00021p00166450 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.120 0.9399208516093277 18 AMTR_s00029p00237180 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase evm_27.TU.AmTr_v1.0_scaffold00029.396 0.9397321880663676 18 AMTR_s00069p00066350 Protein unc-13 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.40 0.9394158825901061 19 AMTR_s00009p00268760 Multi-process regulation.circadian clock.TOC1 evening oscillator component evm_27.TU.AmTr_v1.0_scaffold00009.431 0.9388531195399457 20 AMTR_s00159p00058480 Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00159.22 0.9382089725374035 21 AMTR_s00025p00221330 evm_27.TU.AmTr_v1.0_scaffold00025.310 0.93769447773568 22 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9374184825471895 26 AMTR_s00008p00155920 evm_27.TU.AmTr_v1.0_scaffold00008.78 0.9368780763888763 24 AMTR_s00074p00196560 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00074.124 0.9363173385977329 25 AMTR_s00032p00034370 Cell cycle.organelle machineries.DNA replication.DNA primase and helicase TWINKLE evm_27.TU.AmTr_v1.0_scaffold00032.15 0.9349808246991276 26 AMTR_s00041p00037520 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF160/Yhh1 component evm_27.TU.AmTr_v1.0_scaffold00041.17 0.934338557307157 27 AMTR_s00076p00181180 Protein PTST homolog 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00076.69 0.9340557243452741 28 AMTR_s00078p00192630 evm_27.TU.AmTr_v1.0_scaffold00078.201 0.9332501179363577 29 AMTR_s00186p00032060 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00186.12 0.9331034895230124 30 AMTR_s00024p00219730 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.212 0.9325571038182465 31 AMTR_s00029p00083380 evm_27.TU.AmTr_v1.0_scaffold00029.77 0.9324075125564667 32 AMTR_s00071p00069340 O-fucosyltransferase 38 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.38 0.9323554717494716 33 AMTR_s00045p00068210 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component evm_27.TU.AmTr_v1.0_scaffold00045.55 0.9322367849039638 100 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9315444583160386 35 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9314423934684546 36 AMTR_s00047p00125370 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease evm_27.TU.AmTr_v1.0_scaffold00047.50 0.9310946616207819 37 AMTR_s00101p00067890 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component evm_27.TU.AmTr_v1.0_scaffold00101.41 0.9302631310364213 41 AMTR_s00001p00255740 Coenzyme metabolism.tetrahydrofolate synthesis.dihydrofolate synthetase evm_27.TU.AmTr_v1.0_scaffold00001.339 0.9295908342644569 39 AMTR_s00041p00141370 evm_27.TU.AmTr_v1.0_scaffold00041.101 0.9288546510692047 40 AMTR_s00014p00034060 Cell wall.callose.callose synthase evm_27.TU.AmTr_v1.0_scaffold00014.10 0.9279790181053084 46 AMTR_s00101p00084550 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF77/Rna14 component evm_27.TU.AmTr_v1.0_scaffold00101.61 0.9279749605275124 64 AMTR_s00110p00115240 External stimuli response.biotic stress.pathogen effector.NLR effector receptor 0.9279644720413505 43 AMTR_s00059p00178020 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC3 component evm_27.TU.AmTr_v1.0_scaffold00059.189 0.9278013256099091 79 AMTR_s00060p00033670 Multi-process regulation.TOR signalling pathway.TORC complex.TOR kinase component evm_27.TU.AmTr_v1.0_scaffold00060.9 0.9272509914022407 45 AMTR_s00085p00089520 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component evm_27.TU.AmTr_v1.0_scaffold00085.48 0.9271791648961873 46 AMTR_s00001p00273020 External stimuli response.biotic stress.pathogen effector.NLR effector receptor evm_27.TU.AmTr_v1.0_scaffold00001.586 0.9269102734869638 94 AMTR_s00006p00266490 Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.289 0.9267543148827322 48 AMTR_s00025p00200390 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase evm_27.TU.AmTr_v1.0_scaffold00025.254 0.9267354344268459 95 AMTR_s00042p00226140 evm_27.TU.AmTr_v1.0_scaffold00042.76 0.9264421090638963 50 AMTR_s00093p00080210 Tubulin gamma-1 chain OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00093.21 0.9262929668540743 51 AMTR_s00009p00266540 Plant intracellular Ras-group-related LRR protein 6 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00009.396 0.9260059898307805 52 AMTR_s00182p00037730 Cell cycle.organelle machineries.organelle fission.plastid division.ARC6 FtsZ assembly regulator evm_27.TU.AmTr_v1.0_scaffold00182.17 0.9259853803308381 53 AMTR_s00010p00241770 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial glucanotransferase evm_27.TU.AmTr_v1.0_scaffold00010.311 0.9256705258781917 90 AMTR_s00030p00239430 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.208 0.9253713493903652 55 AMTR_s00020p00187990 evm_27.TU.AmTr_v1.0_scaffold00020.72 0.925361068967122 56 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component evm_27.TU.AmTr_v1.0_scaffold00007.52 0.924837146635297 57 AMTR_s00007p00266080 Protein WHATS THIS FACTOR 1 OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00007.368 0.9242529521639873 58 AMTR_s00062p00112400 evm_27.TU.AmTr_v1.0_scaffold00062.92 0.9240055337207382 59 AMTR_s00044p00170650 evm_27.TU.AmTr_v1.0_scaffold00044.189 0.9235022059330192 60 AMTR_s00078p00166420 Protein degradation.peptidase families.metallopeptidase activities.carboxypeptidase activities.SOL carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00078.156 0.9233128857649767 61 AMTR_s00140p00029580 RNA biosynthesis.transcriptional activation.PHD finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00140.6 0.9232706664646265 62 AMTR_s00049p00191680 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.GP210 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00049.202 0.9227730070146842 63 AMTR_s00059p00199900 Protein modification.phosphorylation.atypical kinase families.PIKK kinase evm_27.TU.AmTr_v1.0_scaffold00059.222 0.9221877750784884 64 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9217529810675972 65 AMTR_s00057p00192540 evm_27.TU.AmTr_v1.0_scaffold00057.216 0.9214564824546755 66 AMTR_s00022p00221290 Clustered mitochondria protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.278 0.9210997437594318 67 AMTR_s00041p00073060 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00041.43 0.9207888614454734 68 AMTR_s00044p00068470 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.zinc cation transporter (Zn-CDF-type) evm_27.TU.AmTr_v1.0_scaffold00044.39 0.920328466169787 69 AMTR_s00029p00113670 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component evm_27.TU.AmTr_v1.0_scaffold00029.124 0.9200187721972342 70 AMTR_s00022p00251260 RNA processing.organelle machineries.RNA modification.tRNA thiolation.MnmA pathway.tRNA thiouridylase evm_27.TU.AmTr_v1.0_scaffold00022.388 0.9199595588519791 71 AMTR_s00169p00051950 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B-type regulatory component evm_27.TU.AmTr_v1.0_scaffold00169.32 0.919846562633584 72 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9192258059752274 74 AMTR_s00009p00259730 DNA damage response.DNA repair mechanisms.mismatch repair (MMR).MSH2-x mismatch repair heterodimers.MSH3 component evm_27.TU.AmTr_v1.0_scaffold00009.314 0.9191999083899679 75 AMTR_s00055p00187070 Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.116 0.9189152874064221 95 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9186382949833093 78 AMTR_s00077p00193670 Cell cycle.cytokinesis.preprophase microtubule organization.MOR1 microtubule-associated protein evm_27.TU.AmTr_v1.0_scaffold00077.237 0.9183509756166647 79 AMTR_s00025p00182750 RNA biosynthesis.rRNA biogenesis.NOF1 control factor evm_27.TU.AmTr_v1.0_scaffold00025.222 0.9182884618753966 80 AMTR_s00004p00038450 Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.21 0.9180235686527696 82 AMTR_s00030p00041970 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.14 0.917964485288406 83 AMTR_s00002p00260810 DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.446 0.9177349850290187 84 AMTR_s00055p00188830 BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.121 0.917322084014735 85 AMTR_s00169p00027470 Cell cycle.interphase.DNA replication.telomere replication.telomere integrity maintenance complex.CTC1 component evm_27.TU.AmTr_v1.0_scaffold00169.14 0.9171241554896256 93 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00065.7 0.9169579316465735 87 AMTR_s01224p00002240 evm_27.TU.AmTr_v1.0_scaffold01224.1 0.9169233398573505 88 AMTR_s00017p00141460 External stimuli response.biotic stress.symbiont-associated response.symbiosis signalling pathway.DMI1/Pollux/Castor calcium cation channel evm_27.TU.AmTr_v1.0_scaffold00017.65 0.9166348231992488 89 AMTR_s00066p00040550 Probable methyltransferase PMT18 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.17 0.9163660348895991 90 AMTR_s00062p00213230 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana 0.915916406362502 92 AMTR_s00007p00201600 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.177 0.915743189045863 93 AMTR_s00092p00069380 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP5/TAC12 component evm_27.TU.AmTr_v1.0_scaffold00092.35 0.9153748356548884 94 AMTR_s00032p00072680 Protein translocation.peroxisome.importomer translocation system.receptor export system.Pex1-Pex6 subcomplex.Pex6 component evm_27.TU.AmTr_v1.0_scaffold00032.44 0.9144911394197066 95 AMTR_s00198p00028070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component evm_27.TU.AmTr_v1.0_scaffold00198.5 0.9144375490426597 96 AMTR_s00026p00146790 Aberrant root formation protein 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00026.71 0.9143605610549055 98 AMTR_s00163p00014030 Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00163.1 0.9136129587853786 100