Sequence Description Alias PCC hrr AMTR_s00012p00234420 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.CRN/MAC10 component evm_27.TU.AmTr_v1.0_scaffold00012.192 0.9437750597810721 4 AMTR_s00045p00114550 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00045.110 0.9374337858650641 2 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component evm_27.TU.AmTr_v1.0_scaffold00009.196 0.9364671027436687 6 AMTR_s00055p00224220 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00055.175 0.9342137962383134 4 AMTR_s00029p00211750 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase evm_27.TU.AmTr_v1.0_scaffold00029.309 0.9336403847406386 5 AMTR_s00010p00246330 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor evm_27.TU.AmTr_v1.0_scaffold00010.333 0.9315105408149583 6 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component evm_27.TU.AmTr_v1.0_scaffold00138.19 0.9312957772175853 24 AMTR_s00006p00253660 Cell cycle.organelle machineries.DNA replication.type-Ia DNA topoisomerase evm_27.TU.AmTr_v1.0_scaffold00006.171 0.9312282388059944 10 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9299415113900588 11 AMTR_s00111p00089410 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP10 assembly factor evm_27.TU.AmTr_v1.0_scaffold00111.60 0.9282232846294013 10 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9280986051312828 14 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9279447223341851 50 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.43 0.9257354039917282 13 AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 evm_27.TU.AmTr_v1.0_scaffold00022.362 0.9242294462947285 14 AMTR_s00056p00047160 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.29 0.9238253465633394 15 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.923606421255159 16 AMTR_s00047p00175730 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00047.99 0.9224653516999105 24 AMTR_s00092p00052470 Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana 0.9216077462330114 18 AMTR_s00056p00038090 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00056.21 0.9215603968443664 72 AMTR_s00049p00137690 evm_27.TU.AmTr_v1.0_scaffold00049.118 0.9195472491731411 20 AMTR_s00080p00141940 tRNA ligase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00080.64 0.9189748007991723 21 AMTR_s00088p00153240 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00088.123 0.9178625719787179 22 AMTR_s00049p00210350 Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.234 0.9166383618516378 23 AMTR_s00029p00159590 Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.192 0.9159396346257495 24 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9158330069579463 51 AMTR_s00004p00261460 Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.256 0.9157351029912685 44 AMTR_s00147p00097570 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00147.54 0.9146182965240687 27 AMTR_s00066p00084950 ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.66 0.9144554880581868 34 AMTR_s00033p00116200 KH domain-containing protein HEN4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.57 0.914164082287456 29 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.9136310107660931 38 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00079.39 0.9134590239558108 31 AMTR_s00009p00184050 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) evm_27.TU.AmTr_v1.0_scaffold00009.114 0.9128328427719686 86 AMTR_s00049p00223290 Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.264 0.9123678813946777 33 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component evm_27.TU.AmTr_v1.0_scaffold00111.21 0.9118119993141023 34 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel evm_27.TU.AmTr_v1.0_scaffold00044.128 0.9109957708079885 35 AMTR_s00024p00225420 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.224 0.9109774855294651 36 AMTR_s00069p00133460 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.97 0.9103876052956902 48 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.9103460057672166 38 AMTR_s00038p00088230 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00038.43 0.9103015962161682 39 AMTR_s00044p00164390 Histone-binding protein MSI1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.179 0.9102866280447043 71 AMTR_s00004p00110090 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VI kinase families.LRR-VI-1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.89 0.9097675169673273 41 AMTR_s00021p00105410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00021.53 0.9092711698944176 43 AMTR_s00131p00018630 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component evm_27.TU.AmTr_v1.0_scaffold00131.4 0.9083343288935068 45 AMTR_s00013p00056220 evm_27.TU.AmTr_v1.0_scaffold00013.19 0.9075446645953948 46 AMTR_s00018p00074980 RNA biosynthesis.transcriptional activation.NAC transcription factor evm_27.TU.AmTr_v1.0_scaffold00018.28 0.907490594257254 47 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9069682173532075 48 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9060451540255476 73 AMTR_s00012p00252410 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component evm_27.TU.AmTr_v1.0_scaffold00012.260 0.9052865551563164 50 AMTR_s00061p00196410 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond evm_27.TU.AmTr_v1.0_scaffold00061.230 0.9050001679965819 51 AMTR_s00029p00147240 Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.173 0.9036855239931906 53 AMTR_s00121p00103870 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00121.21 0.9035613899855492 54 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.9029937609897136 55 AMTR_s00078p00055040 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase evm_27.TU.AmTr_v1.0_scaffold00078.28 0.9023833243249737 56 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9023692529958409 92 AMTR_s00061p00163460 Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.158 0.9021818150681494 59 AMTR_s02193p00008230 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold02193.1 0.9019946218563588 60 AMTR_s00031p00067070 Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana 0.9016022438112588 61 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9010527465103072 62 AMTR_s00038p00071780 Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.30 0.9007754245521831 63 AMTR_s00069p00119460 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.80 0.8988371368640239 100 AMTR_s00011p00233950 Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana 0.8987828706788872 65 AMTR_s00059p00074580 evm_27.TU.AmTr_v1.0_scaffold00059.49 0.8983413490506134 66 AMTR_s00025p00214350 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.288 0.8981231312463287 67 AMTR_s00003p00269470 evm_27.TU.AmTr_v1.0_scaffold00003.408 0.8980476742168814 68 AMTR_s00140p00082700 evm_27.TU.AmTr_v1.0_scaffold00140.38 0.8978145671532701 69 AMTR_s00010p00247870 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.340 0.8969005777195419 70 AMTR_s00682p00010920 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component evm_27.TU.AmTr_v1.0_scaffold00682.1 0.8960462075960371 71 AMTR_s00044p00033620 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Etl1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00044.10 0.895802194503495 80 AMTR_s00001p00270540 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00001.464 0.8948841131381561 75 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.8944548629961561 88 AMTR_s00021p00236970 Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.242 0.893570492230254 78 AMTR_s00004p00128400 Phytohormones.abscisic acid.synthesis.abscisic aldehyde oxidase evm_27.TU.AmTr_v1.0_scaffold00004.118 0.8931509941161716 79 AMTR_s00091p00075810 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00091.25 0.8931062494845866 80 AMTR_s00071p00125410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00071.102 0.8930427143812518 81 AMTR_s00108p00104150 Protein translocation.nucleus.nucleocytoplasmic transport.importin alpha adaptor proteins evm_27.TU.AmTr_v1.0_scaffold00108.20 0.8924348336793709 82 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.8908902436070723 87 AMTR_s00148p00090060 Helicase protein MOM1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00148.61 0.8908650949440462 96 AMTR_s00039p00023570 Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana 0.8905090924255549 90 AMTR_s00032p00197250 Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.178 0.8904145971222497 91 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.8899509767305813 92 AMTR_s00007p00152220 Nucleotide metabolism.purines.salvage pathway.AMP deaminase activities.membrane-associated AMP deaminase evm_27.TU.AmTr_v1.0_scaffold00007.112 0.8898939818670092 94 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.8898495210509265 95 AMTR_s00059p00150840 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.137 0.8897192496463857 96 AMTR_s00045p00075400 Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.65 0.8896380411350187 98 AMTR_s00029p00062590 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.57 0.8893982175390526 99