Sequence Description Alias PCC hrr AMTR_s00090p00120760 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00090.59 0.9440937475464629 2 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9413284295672767 2 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00002.176 0.9282726826088608 6 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9210365521782283 16 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9184082837781806 24 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.9177235458713191 14 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9159542360066555 46 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component evm_27.TU.AmTr_v1.0_scaffold00009.196 0.9146097746507437 20 AMTR_s00001p00224830 evm_27.TU.AmTr_v1.0_scaffold00001.236 0.9124623648543898 14 AMTR_s00010p00155930 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00010.118 0.9119952476026131 10 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9103347106749026 84 AMTR_s00102p00018040 DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1) evm_27.TU.AmTr_v1.0_scaffold00102.3 0.9098839458063791 62 AMTR_s00048p00224070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED34 component evm_27.TU.AmTr_v1.0_scaffold00048.212 0.9090041117868842 81 AMTR_s00039p00150510 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glutamyl-tRNA-dependent amidotransferase complex.GatB component evm_27.TU.AmTr_v1.0_scaffold00039.103 0.9088708184580746 14 AMTR_s00037p00206460 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00037.106 0.9088218086875044 15 AMTR_s00033p00075910 evm_27.TU.AmTr_v1.0_scaffold00033.33 0.9087936133731619 16 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9050681294283079 45 AMTR_s00028p00187760 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00028.80 0.9043584605989333 18 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9043279394114112 72 AMTR_s00071p00100010 Protein biosynthesis.aminoacyl-tRNA synthetase activities.histidine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00071.77 0.9039325528499035 47 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9037451400515821 66 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.9036353855702848 23 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.9025738624866371 32 AMTR_s00058p00109040 evm_27.TU.AmTr_v1.0_scaffold00058.63 0.9023830794409234 24 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase evm_27.TU.AmTr_v1.0_scaffold00004.78 0.902093407751246 25 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9007274861715979 73 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.9002394466726703 28 AMTR_s00120p00041110 evm_27.TU.AmTr_v1.0_scaffold00120.11 0.8999461456142565 29 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8989276950458279 68 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.8985725880018899 31 AMTR_s00069p00147710 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00069.114 0.8970725993952872 71 AMTR_s00014p00128310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase evm_27.TU.AmTr_v1.0_scaffold00014.46 0.896825614420188 67 AMTR_s00018p00166060 Cell wall.lignin.monolignol synthesis.caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT) evm_27.TU.AmTr_v1.0_scaffold00018.91 0.892983437825208 39 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit evm_27.TU.AmTr_v1.0_scaffold00039.46 0.8921717391165175 70 AMTR_s00088p00069780 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00088.41 0.8919916424065782 53 AMTR_s00092p00136000 Cell cycle.organelle machineries.DNA replication.genome stability maintenance.RecA-type recombinase evm_27.TU.AmTr_v1.0_scaffold00092.102 0.8919275708100792 42 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.891541703692924 43 AMTR_s00013p00250400 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.Z-ISO zeta-carotene isomerase evm_27.TU.AmTr_v1.0_scaffold00013.225 0.8902875685899503 45 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.8895850337674958 91 AMTR_s00058p00181770 Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00058.172 0.8890894185816295 49 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8890573518918884 77 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.43 0.8887821075661049 51 AMTR_s00029p00193710 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.261 0.8877517163277174 53 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.8868969976752493 73 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8862249838587739 58 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.8862196603244774 93 AMTR_s00071p00184210 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.189 0.8858250872927761 60 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.884556180833234 76 AMTR_s00072p00056850 RNA processing.RNA modification.rRNA/tRNA methylation.TRM5 tRNA guanosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00072.25 0.8841516070929398 63 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.8835056237641046 84 AMTR_s00077p00102160 Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.85 0.8832251434340523 66 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8831629174417839 74 AMTR_s00171p00052720 evm_27.TU.AmTr_v1.0_scaffold00171.34 0.8831190214758693 68 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.8827115964707349 71 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.882574892121602 87 AMTR_s00068p00065660 evm_27.TU.AmTr_v1.0_scaffold00068.27 0.8817477189975972 76 AMTR_s00007p00268660 evm_27.TU.AmTr_v1.0_scaffold00007.394 0.8815402437723368 78 AMTR_s00224p00011500 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00224.3 0.8804804977263068 81 AMTR_s00078p00160770 protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00078.146 0.879547204557353 83 AMTR_s00046p00150030 RNA processing.ribonuclease activities.RNase P ribonuclease activities.protein-only RNase P evm_27.TU.AmTr_v1.0_scaffold00046.80 0.8793661440870492 84 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.8792272933258559 96 AMTR_s00099p00062060 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.ribonuclease H1 evm_27.TU.AmTr_v1.0_scaffold00099.41 0.8785222534749065 88 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8779031854875867 96 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8777755368008119 91 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.8773508071966026 92 AMTR_s00034p00221180 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00034.92 0.8761757317602266 100