Sequence Description Alias PCC hrr AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein evm_27.TU.AmTr_v1.0_scaffold00004.48 0.9541969625332211 1 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.9410860884913671 2 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component evm_27.TU.AmTr_v1.0_scaffold00001.191 0.9284372799897073 15 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.9278240755079186 6 AMTR_s00092p00018230 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.4 0.92747719779462 17 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.9242156378221233 10 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin evm_27.TU.AmTr_v1.0_scaffold00049.94 0.9222109137037893 9 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9215049184191886 32 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase evm_27.TU.AmTr_v1.0_scaffold00117.15 0.9189148037711856 9 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9174084348741062 51 AMTR_s00002p00203960 Monooxygenase 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.199 0.9173262558048514 11 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.9129833773796114 29 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component evm_27.TU.AmTr_v1.0_scaffold00095.88 0.9128476944356174 34 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9108027954213032 36 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component evm_27.TU.AmTr_v1.0_scaffold00010.515 0.908441847806184 26 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component evm_27.TU.AmTr_v1.0_scaffold00065.208 0.9071439101115043 27 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9068008310452784 27 AMTR_s00058p00182650 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00058.174 0.9059538729280578 29 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component evm_27.TU.AmTr_v1.0_scaffold00019.332 0.9056405304980473 23 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.9048205971391173 23 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.9045627637692615 21 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.9036384311435122 22 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component evm_27.TU.AmTr_v1.0_scaffold00016.38 0.9032272200058369 33 AMTR_s00022p00051940 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00022.32 0.9020867703554205 24 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.901440678148512 32 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.9012798045176836 59 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9001057000691445 79 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.8995274035381904 52 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.899005402654026 31 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.8989417177767749 81 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8989016796272195 31 AMTR_s01016p00008750 ABC transporter G family member 22 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold01016.1 0.8959115519390489 32 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.8956744957961287 53 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.8951222709645701 73 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component evm_27.TU.AmTr_v1.0_scaffold00029.405 0.8950276177780301 70 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.893489197381987 63 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component evm_27.TU.AmTr_v1.0_scaffold00142.34 0.8927724669304731 70 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component evm_27.TU.AmTr_v1.0_scaffold00098.43 0.891843496774754 58 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8907266182984328 51 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00003.202 0.8904789161229358 53 AMTR_s00002p00267790 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB5/NDH18 component evm_27.TU.AmTr_v1.0_scaffold00002.530 0.8885325744743102 41 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8884896734801653 42 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.8876811434064745 69 AMTR_s00039p00114830 evm_27.TU.AmTr_v1.0_scaffold00039.71 0.8873810360798648 44 AMTR_s00018p00255680 Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.171 0.8872894848909225 45 AMTR_s00063p00191490 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase evm_27.TU.AmTr_v1.0_scaffold00063.73 0.8868898140812936 46 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8858914985582792 83 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8842706551672957 48 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.8839274024167542 49 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.8830873546153298 83 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.882979391627507 97 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor evm_27.TU.AmTr_v1.0_scaffold00059.198 0.8814644667972132 53 AMTR_s00004p00153830 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter evm_27.TU.AmTr_v1.0_scaffold00004.160 0.8814158449845624 54 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8811960801416701 79 AMTR_s00087p00141000 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaL evm_27.TU.AmTr_v1.0_scaffold00087.44 0.8808234164281102 77 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.8803114484408616 57 AMTR_s00029p00095840 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.88 0.8798669834699964 58 AMTR_s00002p00271180 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase evm_27.TU.AmTr_v1.0_scaffold00002.613 0.8790939858187662 59 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.878003759450082 60 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8760600157108591 95 AMTR_s00135p00117490 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.fatty acid elongation.fatty acid elongation complex.KCS 3-ketoacyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00135.68 0.8757888864983937 63 AMTR_s00101p00121540 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.95 0.8751983607017045 72 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.875132247111615 97 AMTR_s00022p00232380 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit delta evm_27.TU.AmTr_v1.0_scaffold00022.315 0.8750501212500822 82 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.8750493163914835 88 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.21 0.8750400855891918 90 AMTR_s00049p00157390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY evm_27.TU.AmTr_v1.0_scaffold00049.142 0.8745742956904756 80 AMTR_s00027p00217960 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.81 0.8726223033685055 77 AMTR_s00025p00060270 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor evm_27.TU.AmTr_v1.0_scaffold00025.37 0.8720976403233631 74 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase evm_27.TU.AmTr_v1.0_scaffold00048.87 0.8720613324282337 75 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8717576960760147 89 AMTR_s00022p00112770 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component evm_27.TU.AmTr_v1.0_scaffold00022.100 0.8699462134895404 80 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.8697366752187173 82 AMTR_s00144p00072420 Protein CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00144.36 0.8687476487217036 82 AMTR_s00001p00272260 Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.510 0.867980119434653 84 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00002.387 0.8671411270874297 85 AMTR_s00001p00188890 Carbohydrate metabolism.starch metabolism.synthesis.plastidial phosphoglucomutase evm_27.TU.AmTr_v1.0_scaffold00001.187 0.8671267343686471 86 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase evm_27.TU.AmTr_v1.0_scaffold00083.7 0.866650903610217 88 AMTR_s00040p00174700 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.163 0.8661554626316874 89 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8657641417852867 96 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00021.188 0.8653760647991687 91 AMTR_s00057p00165960 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.divinyl chlorophyllide-a 8-vinyl-reductase evm_27.TU.AmTr_v1.0_scaffold00057.167 0.86527291522051 92 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.57 0.8650459402125238 93 AMTR_s00109p00146830 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB3/NDF4 component evm_27.TU.AmTr_v1.0_scaffold00109.159 0.8647002641845065 94 AMTR_s00030p00229610 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.182 0.8642102732837128 95 AMTR_s00045p00119660 evm_27.TU.AmTr_v1.0_scaffold00045.117 0.8638434517269622 96 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.8627723597989294 100