Sequence Description Alias PCC hrr AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9624978645704347 2 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9468100416475108 8 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9451567055458288 5 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9410212224821864 5 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9362450893381089 12 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9350452084825832 6 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.9340754853779473 10 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9335919989770428 8 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9304360135106783 17 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9298151014613171 13 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase evm_27.TU.AmTr_v1.0_scaffold00176.30 0.9294866939062435 11 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9291808000853623 20 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.9278400645753265 13 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9269291816541698 23 AMTR_s00053p00151810 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond evm_27.TU.AmTr_v1.0_scaffold00053.99 0.9262130645645476 15 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.9203644471106363 16 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9193236545483494 42 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component evm_27.TU.AmTr_v1.0_scaffold00003.203 0.9161669104442267 20 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9137414283381836 34 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.911526401420672 57 AMTR_s00027p00041360 evm_27.TU.AmTr_v1.0_scaffold00027.2 0.9111417479215168 21 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9089620923615822 46 AMTR_s00011p00258380 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.182 0.9069349757765879 23 AMTR_s00036p00109340 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component evm_27.TU.AmTr_v1.0_scaffold00036.44 0.9061889749876915 24 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00002.494 0.9058397699159673 25 AMTR_s00032p00226710 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.coproporphyrinogen III oxidase activities.HemF oxygen-dependent coproporphyrinogen III oxidase evm_27.TU.AmTr_v1.0_scaffold00032.243 0.9056920374137638 26 AMTR_s00029p00083110 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein evm_27.TU.AmTr_v1.0_scaffold00029.76 0.9056249208610664 27 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.905532160280817 28 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9031213497655308 29 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.9018021892803006 46 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.9013778211834086 31 AMTR_s00016p00227430 Multi-process regulation.circadian clock.morning element regulation.TCP20 activation factor evm_27.TU.AmTr_v1.0_scaffold00016.212 0.901252365060953 32 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.901067413515345 33 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.9009290740645339 34 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8990353370072056 35 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8975590410831171 53 AMTR_s00147p00104660 evm_27.TU.AmTr_v1.0_scaffold00147.61 0.8966574511085897 37 AMTR_s00039p00224840 evm_27.TU.AmTr_v1.0_scaffold00039.204 0.8959061023959117 38 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.8956876834827874 51 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.8955655128357201 57 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.8954348777380395 89 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00032.84 0.8932881576933331 42 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.8932843432896217 43 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8932765000933354 52 AMTR_s00007p00097240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP2/TAC2 component evm_27.TU.AmTr_v1.0_scaffold00007.57 0.8929280147345753 46 AMTR_s00023p00031940 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.SLP phosphatase evm_27.TU.AmTr_v1.0_scaffold00023.9 0.8925804251364329 47 AMTR_s00007p00267580 RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor evm_27.TU.AmTr_v1.0_scaffold00007.382 0.891106084114817 48 AMTR_s00160p00027870 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS5 component evm_27.TU.AmTr_v1.0_scaffold00160.6 0.8909087180895561 49 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8909001663300989 70 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component evm_27.TU.AmTr_v1.0_scaffold00029.338 0.8904836366865962 60 AMTR_s00001p00208370 evm_27.TU.AmTr_v1.0_scaffold00001.211 0.8900265514663301 52 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component evm_27.TU.AmTr_v1.0_scaffold00044.9 0.8891940322331793 59 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.8890328349542685 55 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.888650006160937 72 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.8863428094480755 79 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8860493775615106 89 AMTR_s00024p00162030 Protein trichome birefringence OS=Arabidopsis thaliana 0.885840483955304 58 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component evm_27.TU.AmTr_v1.0_scaffold00028.110 0.8855571015882849 59 AMTR_s00041p00228050 Cell wall.cellulose.synthesis.cellulose microfibrils and hemicellulose interaction.COB-type protein evm_27.TU.AmTr_v1.0_scaffold00041.268 0.885516409264071 60 AMTR_s00092p00096920 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor evm_27.TU.AmTr_v1.0_scaffold00092.54 0.8849026484927092 61 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.8843863146104078 82 AMTR_s00022p00253640 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase evm_27.TU.AmTr_v1.0_scaffold00022.401 0.8842583655874471 64 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.8839871851688503 65 AMTR_s00006p00259220 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase evm_27.TU.AmTr_v1.0_scaffold00006.214 0.8835500777812586 66 AMTR_s00029p00242010 evm_27.TU.AmTr_v1.0_scaffold00029.418 0.8830944285011092 67 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.8823935796892404 73 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.8823926200418457 92 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8811960401864608 70 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8805995010211236 71 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8803712547728091 73 AMTR_s00027p00044970 evm_27.TU.AmTr_v1.0_scaffold00027.5 0.8802106368378577 74 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8796679764261736 88 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8783307869601827 80 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8776406508748817 91 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.21 0.8768895126429539 84 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.8767607785349686 82 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.8737213169699474 85 AMTR_s00059p00121300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NOL component evm_27.TU.AmTr_v1.0_scaffold00059.95 0.8736480225862092 86 AMTR_s00002p00244810 RNA processing.RNA modification.pseudouridylation.Pus10-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00002.325 0.8723260120868562 87 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00075.28 0.8716827500510931 88 AMTR_s00048p00192820 evm_27.TU.AmTr_v1.0_scaffold00048.152 0.8708542423214174 89 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.8683275249309748 94 AMTR_s00071p00185160 evm_27.TU.AmTr_v1.0_scaffold00071.193 0.8681627635616331 95 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.8681077234595194 96 AMTR_s00156p00076210 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL15 component evm_27.TU.AmTr_v1.0_scaffold00156.37 0.8680266517510985 97 AMTR_s00032p00221170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00032.228 0.867301652951394 98