Sequence Description Alias PCC hrr AMTR_s00058p00137050 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HOX-like transcription factor evm_27.TU.AmTr_v1.0_scaffold00058.101 0.9379194459425756 1 AMTR_s00117p00120670 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.AP-4 vacuole cargo adaptor complex.AP4E large epsilon subunit evm_27.TU.AmTr_v1.0_scaffold00117.50 0.9348083238178099 2 AMTR_s00007p00168430 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain 0.93131866579005 3 AMTR_s00068p00177220 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDK9 kinase evm_27.TU.AmTr_v1.0_scaffold00068.133 0.9252985924515083 10 AMTR_s00066p00174610 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC1 mitotic-specific Kleisin-type component evm_27.TU.AmTr_v1.0_scaffold00066.206 0.923356014577364 11 AMTR_s00024p00121650 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase evm_27.TU.AmTr_v1.0_scaffold00024.71 0.9197147196809332 36 AMTR_s00025p00248490 Cytoskeleton.microfilament network.actin polymerisation.villin actin-crosslinking factor evm_27.TU.AmTr_v1.0_scaffold00025.405 0.9192145250388245 7 AMTR_s00007p00263470 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.340 0.9150798276002028 18 AMTR_s00004p00140970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.137 0.9149866472504731 61 AMTR_s00009p00267690 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase evm_27.TU.AmTr_v1.0_scaffold00009.409 0.9147777900363029 27 AMTR_s00106p00148070 evm_27.TU.AmTr_v1.0_scaffold00106.122 0.9146856586129323 11 AMTR_s00080p00131040 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00080.56 0.9144445020828522 12 AMTR_s00077p00082680 RNA biosynthesis.transcriptional activation.B3 superfamily.LAV-VAL transcription factor evm_27.TU.AmTr_v1.0_scaffold00077.66 0.9132515402682019 13 AMTR_s00142p00013680 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.beta2 subunit evm_27.TU.AmTr_v1.0_scaffold00142.4 0.9104527440179049 20 AMTR_s00002p00250180 RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT5 component evm_27.TU.AmTr_v1.0_scaffold00002.351 0.9093496577505294 15 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9091116434953618 46 AMTR_s00033p00059780 Protein modification.lipidation.Cys-linked S-acylation.protein S-acyltransferase evm_27.TU.AmTr_v1.0_scaffold00033.26 0.9084751286654876 26 AMTR_s00682p00010920 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component evm_27.TU.AmTr_v1.0_scaffold00682.1 0.9073934075348479 25 AMTR_s00002p00140630 Protein biosynthesis.translation initiation.mRNA loading.eIF4F mRNA unwinding complex.eIF4G component evm_27.TU.AmTr_v1.0_scaffold00002.103 0.9059470057305002 20 AMTR_s00090p00148990 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00090.83 0.9040048986203036 21 AMTR_s00032p00061960 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKC kinase evm_27.TU.AmTr_v1.0_scaffold00032.39 0.9038039413790686 22 AMTR_s00012p00251030 Pumilio homolog 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.251 0.9007523000547963 23 AMTR_s00146p00059560 Cytoskeleton.microfilament network.myosin microfilament-based motor protein activities.class XI myosin evm_27.TU.AmTr_v1.0_scaffold00146.36 0.9001769958780361 24 AMTR_s00042p00170890 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC6 component evm_27.TU.AmTr_v1.0_scaffold00042.45 0.8964124839133558 27 AMTR_s00268p00016240 Protein modification.phosphorylation.atypical kinase families.PIKK kinase evm_27.TU.AmTr_v1.0_scaffold00268.6 0.895701710692229 47 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.74 0.8952273708928782 30 AMTR_s00051p00079490 RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor evm_27.TU.AmTr_v1.0_scaffold00051.29 0.8948328971522486 31 AMTR_s00025p00184490 evm_27.TU.AmTr_v1.0_scaffold00025.223 0.894790664479032 32 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase 0.8936947697194966 57 AMTR_s00004p00023800 Protein modification.phosphorylation.TKL kinase superfamily.MAP3K-RAF kinase evm_27.TU.AmTr_v1.0_scaffold00004.8 0.8935260936302369 36 AMTR_s00061p00084390 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec24 component evm_27.TU.AmTr_v1.0_scaffold00061.60 0.8925467837182489 42 AMTR_s00036p00205320 Protein degradation.peptidase families.metallopeptidase activities.M16 families.PQQL-like peptidase evm_27.TU.AmTr_v1.0_scaffold00036.122 0.8922414155565241 93 AMTR_s00027p00205150 Protein modification.phosphorylation.STE kinase superfamily.MAP4K kinase evm_27.TU.AmTr_v1.0_scaffold00027.73 0.8912809490818544 54 AMTR_s00007p00065880 Lipid metabolism.lipid degradation.phospholipase activities.phospholipase C activities.PI-PLC-type phospholipase C evm_27.TU.AmTr_v1.0_scaffold00007.34 0.891272677418808 40 AMTR_s00028p00239280 Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00028.127 0.8901671039600557 41 AMTR_s00007p00182220 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component evm_27.TU.AmTr_v1.0_scaffold00007.146 0.8901292299959558 42 AMTR_s00009p00114640 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.56 0.8884628488030208 62 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00022.105 0.8876842942549744 45 AMTR_s00069p00185250 BEACH domain-containing protein C2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.184 0.8871889699363733 46 AMTR_s00040p00228310 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP2A large alpha subunit evm_27.TU.AmTr_v1.0_scaffold00040.272 0.8870386510079582 61 AMTR_s00056p00222190 RNA biosynthesis.transcriptional activation.HRT transcription factor evm_27.TU.AmTr_v1.0_scaffold00056.223 0.8869784736229583 52 AMTR_s00002p00266990 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED14 component evm_27.TU.AmTr_v1.0_scaffold00002.516 0.8866375266918345 50 AMTR_s00048p00206050 Solute transport.channels.MSL mechanosensitive ion channel evm_27.TU.AmTr_v1.0_scaffold00048.177 0.884688266144148 59 AMTR_s00009p00067490 Pumilio homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.20 0.8845657322808762 60 AMTR_s00078p00181940 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase evm_27.TU.AmTr_v1.0_scaffold00078.179 0.8842979848253668 61 AMTR_s00055p00165140 Protein modification.N-linked glycosylation.complex N-glycan maturation.beta-1,2-xylosyltransferase evm_27.TU.AmTr_v1.0_scaffold00055.85 0.8837611102082485 82 AMTR_s00009p00238900 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component evm_27.TU.AmTr_v1.0_scaffold00009.205 0.8830980250510295 63 AMTR_s00072p00101130 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00072.48 0.8829766269891236 64 AMTR_s00016p00233120 Cell wall.sporopollenin.exine wall formation.NEF1 exine patterning factor evm_27.TU.AmTr_v1.0_scaffold00016.232 0.8819941894313106 65 AMTR_s00125p00118080 Solute transport.carrier-mediated transport.APC superfamily.HAK/KUP/KT potassium cation transporter evm_27.TU.AmTr_v1.0_scaffold00125.31 0.8819654500955915 66 AMTR_s00066p00188130 Flowering time control protein FPA OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.238 0.8805272558085973 68 AMTR_s00071p00188270 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF3 component evm_27.TU.AmTr_v1.0_scaffold00071.198 0.8804140982341886 69 AMTR_s00024p00246250 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00024.308 0.8803308539847844 70 AMTR_s00027p00080950 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase-activating protein (RAB-GAP) evm_27.TU.AmTr_v1.0_scaffold00027.25 0.880273035659445 71 AMTR_s00024p00059840 Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.23 0.8801279119851977 72 AMTR_s00099p00149450 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.methionine S-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00099.136 0.8789092004025587 74 AMTR_s00017p00130610 DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00017.53 0.8777824428801062 76 AMTR_s00055p00209810 Protein modification.N-linked glycosylation.complex N-glycan maturation.class-II alpha-mannosidase II evm_27.TU.AmTr_v1.0_scaffold00055.149 0.8775174770506736 78 AMTR_s00166p00076690 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase guanine nucleotide exchange factor (RAB-GEF) activities.PUF2 plant-specific RAB5 effector evm_27.TU.AmTr_v1.0_scaffold00166.44 0.8772133011765915 80 AMTR_s00100p00119160 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase evm_27.TU.AmTr_v1.0_scaffold00100.38 0.8770892966695158 81 AMTR_s00078p00055040 RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase evm_27.TU.AmTr_v1.0_scaffold00078.28 0.8757751757015689 99 AMTR_s00071p00043690 BTB/POZ domain-containing protein At2g13690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.23 0.8757378037510436 85 AMTR_s00025p00228240 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TASH3 component evm_27.TU.AmTr_v1.0_scaffold00025.330 0.8754069047867836 86 AMTR_s00030p00200210 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS16/VCL1 component evm_27.TU.AmTr_v1.0_scaffold00030.138 0.875388012443402 87 AMTR_s00065p00185540 Protein modification.N-linked glycosylation.complex N-glycan maturation.class-II glucosidase II complex.subunit alpha evm_27.TU.AmTr_v1.0_scaffold00065.158 0.8753653641588034 88 AMTR_s00163p00018060 Coenzyme metabolism.molybdenum cofactor synthesis.molybdenum ion insertion.bifunctional molybdopterin adenylyltransferase and molybdenumtransferase (CNX1) evm_27.TU.AmTr_v1.0_scaffold00163.5 0.8749887344307674 92 AMTR_s00051p00211030 evm_27.TU.AmTr_v1.0_scaffold00051.93 0.8744499215246075 93 AMTR_s00023p00182890 evm_27.TU.AmTr_v1.0_scaffold00023.121 0.8743315259030798 94 AMTR_s00022p00023850 Protein SIEL OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.9 0.8741359606128547 97 AMTR_s00053p00219090 Protein degradation.peptide tagging.Small-Ubiquitin-like-Modifier (SUMO)-anchor modification (sumoylation).SUMO chain-forming-ligase E4 enzyme (PIAL) evm_27.TU.AmTr_v1.0_scaffold00053.172 0.8732801993946541 99 AMTR_s00002p00187140 Elongation factor 1-alpha 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.164 0.8732163868959693 100