Sequence Description Alias PCC hrr AMTR_s00022p00205270 Phytohormones.jasmonic acid.synthesis.13-lipoxygenase evm_27.TU.AmTr_v1.0_scaffold00022.242 0.9570651580222554 1 AMTR_s00009p00163120 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00009.90 0.9431607663640631 2 AMTR_s00065p00176540 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00065.146 0.9368746193878144 3 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) evm_27.TU.AmTr_v1.0_scaffold00005.125 0.9331084621557423 4 AMTR_s00001p00175920 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase evm_27.TU.AmTr_v1.0_scaffold00001.167 0.9307317585477591 5 AMTR_s00018p00243310 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00018.150 0.9303737147837328 6 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.9232977168994525 7 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin evm_27.TU.AmTr_v1.0_scaffold00071.5 0.9188987620057422 25 AMTR_s00089p00043950 RNA biosynthesis.transcriptional activation.bHLH transcription factor evm_27.TU.AmTr_v1.0_scaffold00089.12 0.918711497326043 9 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00166.36 0.9176977193534273 10 AMTR_s00019p00244740 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.373 0.911596486195001 11 AMTR_s00091p00081150 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00091.27 0.9108592227168948 16 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor evm_27.TU.AmTr_v1.0_scaffold00049.26 0.9094866557462223 15 AMTR_s00002p00270990 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyllase (CLH) evm_27.TU.AmTr_v1.0_scaffold00002.603 0.907761156634327 14 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00016.302 0.9053895219189362 41 AMTR_s00022p00242510 Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.352 0.9053763222708608 16 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9031002243812679 33 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor evm_27.TU.AmTr_v1.0_scaffold00149.10 0.902497159350143 18 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00001.249 0.8993608174339167 29 AMTR_s00047p00149040 Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00047.69 0.8993363298059481 20 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8992403587513657 35 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.8957404469734588 68 AMTR_s00037p00168570 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma evm_27.TU.AmTr_v1.0_scaffold00037.79 0.895319858233669 29 AMTR_s00046p00093500 Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit b_ evm_27.TU.AmTr_v1.0_scaffold00046.51 0.8930236355712577 27 AMTR_s00049p00201160 Solute transport.carrier-mediated transport.PHT2 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00049.215 0.8906356809935304 25 AMTR_s00045p00209230 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component evm_27.TU.AmTr_v1.0_scaffold00045.285 0.8859712980861227 26 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00106.79 0.8853617863317318 67 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD evm_27.TU.AmTr_v1.0_scaffold00103.18 0.8852989574018096 53 AMTR_s00024p00238750 evm_27.TU.AmTr_v1.0_scaffold00024.272 0.8849502789471444 29 AMTR_s00096p00137440 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.monodehydroascorbate reductase (MDAR) evm_27.TU.AmTr_v1.0_scaffold00096.88 0.8827755141702223 30 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor evm_27.TU.AmTr_v1.0_scaffold00099.164 0.8791197748137368 71 AMTR_s00078p00065110 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.BSD2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00078.37 0.8780510504810476 32 AMTR_s00057p00165650 evm_27.TU.AmTr_v1.0_scaffold00057.165 0.8779185416418035 33 AMTR_s00032p00227150 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00032.244 0.8770349680427216 34 AMTR_s00009p00267810 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.SUF-D component evm_27.TU.AmTr_v1.0_scaffold00009.411 0.8757534067117085 35 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8746527628978601 61 AMTR_s00021p00158020 RNA biosynthesis.transcriptional activation.TCP transcription factor evm_27.TU.AmTr_v1.0_scaffold00021.111 0.8742028553254686 37 AMTR_s00009p00267860 evm_27.TU.AmTr_v1.0_scaffold00009.412 0.8724367339013568 38 AMTR_s00044p00107090 Cytoskeleton.cp-actin-dependent plastid movement.PMI1/PMI15 cp-actin stability factor evm_27.TU.AmTr_v1.0_scaffold00044.78 0.8715470942802113 39 AMTR_s00070p00129320 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin electron carrier evm_27.TU.AmTr_v1.0_scaffold00070.69 0.8706614280086031 40 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8698862034925534 56 AMTR_s00024p00153080 Protein modification.phosphorylation.TKL kinase superfamily.G-Lectin kinase families.SD-2 kinase evm_27.TU.AmTr_v1.0_scaffold00024.107 0.8676009910517929 42 AMTR_s00024p00238310 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.270 0.8665577875413523 43 AMTR_s00143p00079100 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00143.18 0.8653423364390984 44 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.8643322674060437 45 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8618579223200525 71 AMTR_s00001p00270240 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component evm_27.TU.AmTr_v1.0_scaffold00001.459 0.860884798964398 47 AMTR_s00036p00109340 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component evm_27.TU.AmTr_v1.0_scaffold00036.44 0.8601883817397015 77 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG evm_27.TU.AmTr_v1.0_scaffold00061.40 0.8589497422976202 97 AMTR_s00044p00131190 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00044.119 0.8578415007592953 93 AMTR_s00037p00234060 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component evm_27.TU.AmTr_v1.0_scaffold00037.152 0.8578192703511113 60 AMTR_s00165p00029520 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00165.14 0.8568083245368957 54 AMTR_s00016p00088520 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein evm_27.TU.AmTr_v1.0_scaffold00016.50 0.8557243529811948 57 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase evm_27.TU.AmTr_v1.0_scaffold00029.342 0.8553400834602797 87 AMTR_s00062p00151050 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00062.139 0.8534473746778553 59 AMTR_s00180p00025240 evm_27.TU.AmTr_v1.0_scaffold00180.11 0.8530124000358623 60 AMTR_s00106p00057410 evm_27.TU.AmTr_v1.0_scaffold00106.33 0.8509001530181032 62 AMTR_s00039p00159460 evm_27.TU.AmTr_v1.0_scaffold00039.112 0.8503337347441321 63 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component evm_27.TU.AmTr_v1.0_scaffold00088.122 0.8497933099220297 100 AMTR_s00140p00105610 Photosynthesis.calvin cycle.NADPH-dependent malate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00140.51 0.8481905993320774 66 AMTR_s00040p00098330 Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.61 0.8478898341192455 67 AMTR_s00017p00219220 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT1 protease evm_27.TU.AmTr_v1.0_scaffold00017.166 0.8456900188128743 69 AMTR_s00028p00213700 Cytoskeleton.microfilament network.myosin microfilament-based motor protein activities.MadB myosin adaptor protein evm_27.TU.AmTr_v1.0_scaffold00028.102 0.8451076727102276 70 AMTR_s00051p00142580 Uncharacterized protein At4g06744 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00051.54 0.8450391489804054 71 AMTR_s00001p00147850 Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.130 0.8429034661460448 73 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8416116105806315 82 AMTR_s00003p00079190 External stimuli response.temperature.temperature sensors.PHY-B temperature sensor protein evm_27.TU.AmTr_v1.0_scaffold00003.45 0.8412952157201018 78 AMTR_s00066p00165410 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00066.180 0.8354782045925402 85 AMTR_s00069p00175260 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT1 protease evm_27.TU.AmTr_v1.0_scaffold00069.155 0.8350555567548165 85 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8348806177426354 92 AMTR_s00077p00180520 evm_27.TU.AmTr_v1.0_scaffold00077.203 0.8347385078817143 88 AMTR_s00007p00182110 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP4 protein evm_27.TU.AmTr_v1.0_scaffold00007.145 0.833490654159792 90 AMTR_s00002p00253880 Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.377 0.8323071404998954 91 AMTR_s00165p00028990 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00165.13 0.8318409553526559 93 AMTR_s00066p00176700 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00066.209 0.8307837054690488 95 AMTR_s00103p00133560 Solute transport.carrier-mediated transport.OPT family.iron chelator transporter (YSL-type) evm_27.TU.AmTr_v1.0_scaffold00103.83 0.8299309982069945 96 AMTR_s00001p00191590 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.190 0.8298706091529128 97 AMTR_s00051p00085060 Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00051.31 0.8292196977519142 99 AMTR_s00066p00179760 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00066.221 0.8259654727209653 100