Sequence Description Alias PCC hrr AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.9542676453592871 2 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9463404511003126 5 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9339183740583515 7 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.93256467056176 16 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9319452218774837 5 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.9313292596730154 6 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9285412744826638 14 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9281042245804413 19 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter evm_27.TU.AmTr_v1.0_scaffold00033.192 0.927577082999131 17 AMTR_s00056p00038090 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00056.21 0.9266858692827333 52 AMTR_s00077p00140050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.NFS2 cysteine desulfurase component evm_27.TU.AmTr_v1.0_scaffold00077.138 0.9257268186734461 11 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.924241141951048 37 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.9235808763112486 13 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9214723486262737 53 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9209277948876609 15 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9173380006364282 36 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.9128910171636334 40 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9127273636563656 19 AMTR_s00045p00176400 Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.212 0.9127017888510937 20 AMTR_s00003p00269470 evm_27.TU.AmTr_v1.0_scaffold00003.408 0.9126406859429942 21 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.912443281355344 69 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9121191593298653 39 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9119695945139176 33 AMTR_s00013p00056780 evm_27.TU.AmTr_v1.0_scaffold00013.20 0.9117406350619607 87 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00079.39 0.9096373753415944 28 AMTR_s00171p00041870 evm_27.TU.AmTr_v1.0_scaffold00171.18 0.9088183737915746 27 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.908609859827804 60 AMTR_s00131p00071060 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase evm_27.TU.AmTr_v1.0_scaffold00131.42 0.9080724415032948 41 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.9077585442157989 30 AMTR_s00061p00182640 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00061.204 0.9074660832335159 70 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.9072379340082033 35 AMTR_s00012p00252410 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component evm_27.TU.AmTr_v1.0_scaffold00012.260 0.9067339778731701 33 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9060608043427786 42 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9045029941542726 38 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9041152599528981 62 AMTR_s00077p00182530 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.207 0.9039154399780521 41 AMTR_s00024p00154360 Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00024.110 0.9038358073618974 83 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9032492594100284 57 AMTR_s00004p00048050 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate dehydratase evm_27.TU.AmTr_v1.0_scaffold00004.31 0.9014091243669717 46 AMTR_s00069p00147710 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00069.114 0.9004279120815043 64 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.900123429021335 58 AMTR_s00067p00091740 Protein biosynthesis.translation elongation.diphthamide-modification of eEF2.DPH6 diphthamide synthetase evm_27.TU.AmTr_v1.0_scaffold00067.69 0.899278749121036 50 AMTR_s00019p00198460 evm_27.TU.AmTr_v1.0_scaffold00019.228 0.8978403072987015 52 AMTR_s00163p00072710 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00163.29 0.8977158847587302 54 AMTR_s00132p00051080 Protein DJ-1 homolog C OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00132.13 0.8975791849222552 56 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8964495635965917 59 AMTR_s00002p00090480 evm_27.TU.AmTr_v1.0_scaffold00002.47 0.8957028859998242 100 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.8951613872225614 61 AMTR_s00002p00244810 RNA processing.RNA modification.pseudouridylation.Pus10-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00002.325 0.8950871050618099 62 AMTR_s00039p00083280 Secondary metabolism.nitrogen-containing secondary compounds.glucosinolates.glucosinolate synthesis.methylthioalkylmalate isomerase.large subunit evm_27.TU.AmTr_v1.0_scaffold00039.46 0.8950066539032208 63 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00002.176 0.894611299133157 64 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.8944704570446957 66 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8932745721883748 72 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.8922094943853686 74 AMTR_s00056p00047160 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.29 0.8920590220246418 75 AMTR_s00030p00088210 RNA biosynthesis.transcriptional activation.Trihelix transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.34 0.8919732236189815 77 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.8911066441878679 81 AMTR_s00003p00075520 Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.43 0.8909829109212847 82 AMTR_s00100p00112150 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS8 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00100.35 0.8909713541527229 99 AMTR_s00053p00158610 Coenzyme metabolism.tetrahydrofolate synthesis.folyl-polyglutamate synthetase evm_27.TU.AmTr_v1.0_scaffold00053.107 0.8909469426180661 84 AMTR_s00122p00097060 Solute transport.carrier-mediated transport.BART superfamily.BASS family.BAT 2-keto acid transporter evm_27.TU.AmTr_v1.0_scaffold00122.40 0.8908565357330281 85 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.8904556661266596 87 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.8903718363420606 96 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8902779254310923 89 AMTR_s00142p00090900 evm_27.TU.AmTr_v1.0_scaffold00142.59 0.8901320180529143 90 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8900708931962809 92 AMTR_s00068p00165420 evm_27.TU.AmTr_v1.0_scaffold00068.119 0.8900351965208567 93 AMTR_s00153p00036670 Lipid metabolism.galactolipid and sulfolipid synthesis.plastidial UDP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00153.14 0.8898831632147324 94 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.8894499761382186 95 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8888516871062317 97