Sequence Description Alias PCC hrr AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9628825322696042 2 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.9554401911100261 2 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.949319881407578 5 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.939045891025019 4 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00002.387 0.937404786160238 5 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.9372553161726069 6 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9351899166659191 16 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.204 0.9350036944951893 8 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component evm_27.TU.AmTr_v1.0_scaffold00142.34 0.9344909811723637 9 AMTR_s00022p00112770 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCq component evm_27.TU.AmTr_v1.0_scaffold00022.100 0.9296058762993197 10 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9287435025336197 11 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase evm_27.TU.AmTr_v1.0_scaffold00117.15 0.928102813108497 12 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9272555192371496 20 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein evm_27.TU.AmTr_v1.0_scaffold00004.48 0.9247865127960433 14 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.9235970557398635 21 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.9230783989560435 16 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.9217519034668455 17 AMTR_s00066p00057600 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.CIN phosphatase evm_27.TU.AmTr_v1.0_scaffold00066.32 0.9217474376086222 18 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.9210841919554993 19 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.9205053681944112 20 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9203431467977299 35 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.9194723317724429 22 AMTR_s00025p00248060 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.401 0.9173713714581299 23 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.9165257452402187 24 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.9155587607469986 25 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9151060400705068 26 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.9149950352152336 27 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00021.188 0.9149126551076444 28 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.9132933061424646 29 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.9128192777958528 30 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9127692739964174 31 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9124201451779099 32 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.9123363881197418 33 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.9116240374953297 34 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.9111311943486526 35 AMTR_s00119p00060890 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00119.41 0.9108027954213032 36 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.9088019153815264 37 AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.9080617073317122 38 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.9075037348659706 39 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component evm_27.TU.AmTr_v1.0_scaffold00001.191 0.9074668486657789 40 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.9072941544222076 41 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase evm_27.TU.AmTr_v1.0_scaffold00001.484 0.9070728037583884 42 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00040.184 0.9057632340159887 43 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9036659540613992 70 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin evm_27.TU.AmTr_v1.0_scaffold00049.94 0.9030485200808838 45 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.902508567850728 71 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9020633211296213 56 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.9014174017182113 48 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9014005486564495 80 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00058.152 0.9008014473731528 50 AMTR_s00103p00071860 Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (ERD6-type) evm_27.TU.AmTr_v1.0_scaffold00103.38 0.9007465269305203 51 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8997860837996162 52 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.8994317853659165 53 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.8993422535072931 54 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.8990327466591853 56 AMTR_s00033p00159870 Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.105 0.8984728948349994 57 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component evm_27.TU.AmTr_v1.0_scaffold00019.332 0.898138408210384 58 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.8979283906761938 59 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8973234833739056 60 AMTR_s00104p00098970 evm_27.TU.AmTr_v1.0_scaffold00104.36 0.8960722502773538 61 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.8959381174879827 62 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8954462794456922 63 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8954005828613506 64 AMTR_s00001p00188890 Carbohydrate metabolism.starch metabolism.synthesis.plastidial phosphoglucomutase evm_27.TU.AmTr_v1.0_scaffold00001.187 0.8951409264044053 65 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.8950131579932857 66 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8938005971700789 68 AMTR_s00101p00054740 evm_27.TU.AmTr_v1.0_scaffold00101.27 0.8932140510508676 69 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8910824387461321 70 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.8909810144955835 71 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.890970852985569 73 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component evm_27.TU.AmTr_v1.0_scaffold00003.203 0.8909254797483818 73 AMTR_s00001p00272260 Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.510 0.8907889750966803 74 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.8901692345550347 75 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.890003567721366 76 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8894689324686802 98 AMTR_s00038p00072170 Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.31 0.8894538585761553 78 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8891663053388743 79 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8885651726248445 80 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.887442563742475 82 AMTR_s00027p00217960 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.81 0.8872120115847324 83 AMTR_s00101p00054450 evm_27.TU.AmTr_v1.0_scaffold00101.26 0.8871517686031939 84 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.887129725782363 85 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8870429131893928 86 AMTR_s00044p00085200 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.57 0.8863123997501742 87 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.8855070696261615 89 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.884618678991582 95 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00069.157 0.8843708909877108 90 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.8832265277272231 91 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.88279248251716 92 AMTR_s00029p00095840 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.88 0.8812517058401469 94 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein evm_27.TU.AmTr_v1.0_scaffold00115.3 0.8812180948357129 95 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8810319296962537 96 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8810312408146831 97 AMTR_s00002p00203960 Monooxygenase 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.199 0.8797388771845501 99 AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.8796115734034177 100