Sequence Description Alias PCC hrr AMTR_s00012p00234420 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.CRN/MAC10 component evm_27.TU.AmTr_v1.0_scaffold00012.192 0.9538843476481162 3 AMTR_s00002p00059110 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.IMB4 import karyopherin evm_27.TU.AmTr_v1.0_scaffold00002.23 0.9529876847921408 2 AMTR_s00147p00036340 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00147.15 0.9507627088813196 3 AMTR_s00063p00100200 PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00063.17 0.9462642224280264 4 AMTR_s00047p00175730 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP2/NOP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00047.99 0.9432999947557748 5 AMTR_s00019p00154210 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ21/22 splicing factor evm_27.TU.AmTr_v1.0_scaffold00019.143 0.943126224885081 6 AMTR_s00111p00041460 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3a component evm_27.TU.AmTr_v1.0_scaffold00111.21 0.9393253978659767 7 AMTR_s00011p00229900 evm_27.TU.AmTr_v1.0_scaffold00011.109 0.9374952630601704 9 AMTR_s00001p00270540 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00001.464 0.9373267983256341 9 AMTR_s00046p00164820 Protein modification.acetylation.NatC-type N-terminal acetylase complex.NAA35 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00046.88 0.936434684640781 10 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9357044012899747 14 AMTR_s00069p00119460 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.80 0.9349824517804008 12 AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component evm_27.TU.AmTr_v1.0_scaffold00138.19 0.9349385569317138 16 AMTR_s00038p00088230 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00038.43 0.9326164848630111 14 AMTR_s00003p00101050 evm_27.TU.AmTr_v1.0_scaffold00003.65 0.9315003250143891 20 AMTR_s00044p00033620 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Etl1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00044.10 0.931336376760144 16 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9307392356473723 41 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9303168206985474 53 AMTR_s00122p00094620 RNA biosynthesis.transcriptional repression.LUG transcriptional co-repressor evm_27.TU.AmTr_v1.0_scaffold00122.38 0.9302609780664245 22 AMTR_s00111p00073020 Cell cycle.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin ligase complex.arc lamp subcomplex.APC8 component evm_27.TU.AmTr_v1.0_scaffold00111.44 0.9291881720783635 20 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9287174263934571 25 AMTR_s00012p00252410 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc75-III component evm_27.TU.AmTr_v1.0_scaffold00012.260 0.9283493263456767 22 AMTR_s00066p00084950 ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.66 0.9283490190256278 23 AMTR_s00159p00062070 RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.AP2-type transcription factor evm_27.TU.AmTr_v1.0_scaffold00159.24 0.9270459339359246 24 AMTR_s00004p00261460 Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.256 0.9268290987864871 25 AMTR_s00105p00039650 evm_27.TU.AmTr_v1.0_scaffold00105.16 0.926811765958242 26 AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 evm_27.TU.AmTr_v1.0_scaffold00022.362 0.9266388259622367 27 AMTR_s00088p00115810 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.argininosuccinate synthetase evm_27.TU.AmTr_v1.0_scaffold00088.82 0.9264399607563174 28 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.9262494581654064 29 AMTR_s00131p00018630 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B2 component evm_27.TU.AmTr_v1.0_scaffold00131.4 0.9260335053045566 30 AMTR_s00104p00054580 Vesicle trafficking.endomembrane trafficking.post-Golgi trafficking.SCD complex.SCD1 protein evm_27.TU.AmTr_v1.0_scaffold00104.16 0.925676682256945 53 AMTR_s00006p00256440 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-gamma component evm_27.TU.AmTr_v1.0_scaffold00006.192 0.9227048738298911 32 AMTR_s00131p00040500 Small RNA degrading nuclease 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00131.25 0.922690644464098 33 AMTR_s00006p00242820 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component evm_27.TU.AmTr_v1.0_scaffold00006.121 0.9219559513381486 34 AMTR_s00109p00056900 La protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.42 0.9216407286527313 35 AMTR_s00003p00233250 evm_27.TU.AmTr_v1.0_scaffold00003.233 0.9214288379902796 51 AMTR_s00010p00016450 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT6 zeta subunit evm_27.TU.AmTr_v1.0_scaffold00010.5 0.9207833892814892 37 AMTR_s00062p00159540 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.149 0.9204901489134072 38 AMTR_s00029p00062590 Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.57 0.9204508346559829 39 AMTR_s00003p00020850 Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.6 0.9202616533833692 44 AMTR_s00007p00259060 Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.316 0.9201306981922516 41 AMTR_s00049p00084680 Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.extensins (EXTs).glycosylation.EXT serine O-alpha-galactosyltransferase evm_27.TU.AmTr_v1.0_scaffold00049.55 0.9200593876139752 42 AMTR_s00209p00023450 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00209.4 0.9199096090684585 43 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9195404347806907 44 AMTR_s00019p00255470 Protein biosynthesis.translation elongation.eEF1B eEF1A-GDP-recycling complex.eEF1B-gamma component evm_27.TU.AmTr_v1.0_scaffold00019.442 0.918993143980621 45 AMTR_s00064p00050700 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator evm_27.TU.AmTr_v1.0_scaffold00064.11 0.9188611413567912 46 AMTR_s00003p00122400 Lipid metabolism.lipid degradation.fatty acid degradation.alternative beta-oxidation.monofunctionial hydroxyacyl-CoA dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00003.89 0.9163617673457289 76 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.9163255450368584 49 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9156902566288746 50 AMTR_s00082p00169320 RNA biosynthesis.transcriptional activation.GeBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00082.40 0.9151412888843854 51 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme evm_27.TU.AmTr_v1.0_scaffold00002.109 0.9148637747423934 52 AMTR_s00140p00082700 evm_27.TU.AmTr_v1.0_scaffold00140.38 0.9148279040322828 53 AMTR_s00138p00108220 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.TPLATE AP-2 co-adaptor complex.TWD40 component evm_27.TU.AmTr_v1.0_scaffold00138.52 0.9147351031551765 54 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9147179890007813 56 AMTR_s00059p00150840 COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.137 0.9147006249207025 56 AMTR_s00110p00073830 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00110.39 0.9146688777469548 66 AMTR_s00061p00196410 Enzyme classification.EC_6 ligases.EC_6.2 ligase forming carbon-sulfur bond evm_27.TU.AmTr_v1.0_scaffold00061.230 0.9145838508840973 58 AMTR_s00036p00173790 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00036.85 0.9133834285112803 59 AMTR_s00099p00018620 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN5 regulatory component evm_27.TU.AmTr_v1.0_scaffold00099.5 0.9133644777717658 60 AMTR_s00061p00180830 Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.199 0.9132365821555021 61 AMTR_s00101p00087960 Nucleotide metabolism.purines.phosphotransfers.guanylate kinase evm_27.TU.AmTr_v1.0_scaffold00101.64 0.9131999357782618 62 AMTR_s00024p00216120 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP7 assembly factor evm_27.TU.AmTr_v1.0_scaffold00024.201 0.9128986483619339 63 AMTR_s00072p00168660 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS54 GARP-specific component evm_27.TU.AmTr_v1.0_scaffold00072.118 0.9128854160414094 64 AMTR_s00062p00113470 DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00062.93 0.91266718504536 65 AMTR_s00040p00226100 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00040.267 0.9124729010280023 66 AMTR_s00028p00237040 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.124 0.9121888853602352 71 AMTR_s00062p00040090 RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DAWDLE pri-miRNA-DCL1 association factor evm_27.TU.AmTr_v1.0_scaffold00062.21 0.9119981427564818 68 AMTR_s00071p00125410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00071.102 0.9117954425620853 69 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.9116878581731811 70 AMTR_s00062p00102370 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP evm_27.TU.AmTr_v1.0_scaffold00062.75 0.9102866280447043 71 AMTR_s00102p00095780 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.AP-2 cargo adaptor complex.AP1/2B large beta subunit evm_27.TU.AmTr_v1.0_scaffold00102.50 0.9096274681429543 72 AMTR_s00001p00229100 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF64/Rna15 component evm_27.TU.AmTr_v1.0_scaffold00001.240 0.9095364365560167 73 AMTR_s00092p00116010 KH domain-containing protein At4g18375 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.77 0.9094022565725394 74 AMTR_s00049p00137690 evm_27.TU.AmTr_v1.0_scaffold00049.118 0.9092072075614668 75 AMTR_s00060p00130340 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00060.71 0.9090360372513924 76 AMTR_s00069p00133460 Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.97 0.9086095903065909 77 AMTR_s00025p00115820 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor evm_27.TU.AmTr_v1.0_scaffold00025.105 0.908443462612517 78 AMTR_s00114p00022520 ACT domain-containing protein ACR12 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00114.8 0.9080926647399153 79 AMTR_s00044p00137040 Solute transport.channels.GLR ligand-gated cation channel evm_27.TU.AmTr_v1.0_scaffold00044.128 0.9075298145615167 80 AMTR_s00016p00255950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00016.338 0.9074326829351409 82 AMTR_s00021p00078920 Protein modification.phosphorylation.SCY1 kinase evm_27.TU.AmTr_v1.0_scaffold00021.35 0.9067351521080119 84 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.9067018345755894 88 AMTR_s00021p00236970 Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.242 0.9063835731193183 87 AMTR_s00002p00090480 evm_27.TU.AmTr_v1.0_scaffold00002.47 0.9054207410682525 88 AMTR_s00131p00046730 Solute transport.carrier-mediated transport.FAX fatty acid transporter evm_27.TU.AmTr_v1.0_scaffold00131.27 0.905123453248094 89 AMTR_s00065p00210150 evm_27.TU.AmTr_v1.0_scaffold00065.206 0.9049140019946785 90 AMTR_s00076p00078090 Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00076.20 0.9048435667903468 91 AMTR_s00183p00020680 Nucleotide metabolism.purines.ribonucleotide (RN) anabolism.bifunctional 5-aminoimidazole-4-carboxamide RN transformylase and IMP cyclohydrolase evm_27.TU.AmTr_v1.0_scaffold00183.5 0.9046606367211987 92 AMTR_s00010p00246330 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor evm_27.TU.AmTr_v1.0_scaffold00010.333 0.9042697612218826 93 AMTR_s00068p00130970 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00068.89 0.9040965300696218 95 AMTR_s00024p00115620 Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.65 0.9037155044622441 96 AMTR_s00107p00047780 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00107.18 0.9035997006679961 98 AMTR_s00019p00231450 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB deconjugation of neddylated cullin.COP9 signalosome complex.CSN5 component evm_27.TU.AmTr_v1.0_scaffold00019.317 0.9035737262895094 99 AMTR_s00092p00100450 Coenzyme metabolism.prenylquinone synthesis.plastoquinone synthesis.SPS3 solanesyl diphosphate synthase evm_27.TU.AmTr_v1.0_scaffold00092.58 0.9035732760775967 100