Sequence Description Alias PCC hrr AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.9448498903337411 3 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.940063457216329 3 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase evm_27.TU.AmTr_v1.0_scaffold00059.146 0.9287172641265862 8 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.9256209566370657 4 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.919494537944944 9 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.9157490224333209 12 AMTR_s00048p00085290 Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris evm_27.TU.AmTr_v1.0_scaffold00048.41 0.9059412965653414 9 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9057930029108758 36 AMTR_s00002p00212650 Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor evm_27.TU.AmTr_v1.0_scaffold00002.223 0.9052452553613773 9 AMTR_s00100p00127450 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00100.46 0.9031135425564126 10 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9021687891405608 38 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.9002342381503337 21 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.9000183795356723 28 AMTR_s00035p00023210 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.regulatory pyruvate orthophosphate dikinase kinase evm_27.TU.AmTr_v1.0_scaffold00035.4 0.8987900896640678 14 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.896516676751781 29 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.8952378915040972 29 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8950796064859426 60 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8945653568525679 59 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8939699426566594 62 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase evm_27.TU.AmTr_v1.0_scaffold00101.37 0.8936663336719065 51 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.8936356786459647 21 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.8921427187029393 22 AMTR_s00132p00051080 Protein DJ-1 homolog C OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00132.13 0.8913458935906959 24 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.8901606936080368 86 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.8899388790718877 77 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.8896204904444385 82 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00117.48 0.8890173432775911 43 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8888829062190099 47 AMTR_s00001p00178450 Protein modification.disulfide bond formation.chloroplast.thiol-disulfide oxidoreductase (LTO1) evm_27.TU.AmTr_v1.0_scaffold00001.171 0.8880892097463982 30 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8878520740070817 60 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.8877213153486716 35 AMTR_s00092p00083700 Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.44 0.8866474992039288 33 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8863814401694252 35 AMTR_s00164p00068000 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00164.30 0.8849437422835253 35 AMTR_s00044p00231480 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M24 methionyl aminopeptidase (MAP1) evm_27.TU.AmTr_v1.0_scaffold00044.254 0.8847860754484914 36 AMTR_s00177p00068130 evm_27.TU.AmTr_v1.0_scaffold00177.37 0.8835878537216675 37 AMTR_s00106p00071130 Senescence-associated protein OSA15, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00106.45 0.8830999951699084 38 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.882915388029934 93 AMTR_s00022p00127970 evm_27.TU.AmTr_v1.0_scaffold00022.120 0.8828898038684705 40 AMTR_s00013p00245270 evm_27.TU.AmTr_v1.0_scaffold00013.208 0.8826892235020078 41 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8815698618471142 78 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.8807302092279037 68 AMTR_s00078p00158650 evm_27.TU.AmTr_v1.0_scaffold00078.142 0.8807014907526424 44 AMTR_s00001p00224830 evm_27.TU.AmTr_v1.0_scaffold00001.236 0.8803688083279873 77 AMTR_s00068p00065660 evm_27.TU.AmTr_v1.0_scaffold00068.27 0.8803030834699133 58 AMTR_s00007p00141970 Bifunctional monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.93 0.880203633099103 47 AMTR_s00002p00249620 Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.348 0.8798915173424585 48 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase evm_27.TU.AmTr_v1.0_scaffold00055.158 0.8792197767907121 49 AMTR_s00033p00233480 Nicotinamidase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.233 0.8781767413701473 50 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase evm_27.TU.AmTr_v1.0_scaffold00126.53 0.877853969981456 51 AMTR_s00019p00158670 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP5 protein evm_27.TU.AmTr_v1.0_scaffold00019.152 0.8774737832246456 53 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.8773736086881437 99 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome evm_27.TU.AmTr_v1.0_scaffold00126.1 0.877118120935852 55 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase evm_27.TU.AmTr_v1.0_scaffold00074.38 0.8769729595638709 56 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8751612944637552 70 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.874721414861007 93 AMTR_s00007p00251190 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR6 evm_27.TU.AmTr_v1.0_scaffold00007.284 0.8743253146051907 60 AMTR_s00040p00111170 Protein ORANGE-GREEN, chloroplastic OS=Cucumis melo evm_27.TU.AmTr_v1.0_scaffold00040.80 0.8742726947727052 61 AMTR_s00008p00223050 Protein OBERON 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.141 0.8741789233041165 62 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8740645301942959 69 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00007.32 0.8739867526010404 65 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8738683090840912 66 AMTR_s00078p00065640 evm_27.TU.AmTr_v1.0_scaffold00078.39 0.8727532490671017 68 AMTR_s00029p00159160 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.190 0.8727002555018841 69 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8725498428912368 82 AMTR_s00047p00085560 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO-type) evm_27.TU.AmTr_v1.0_scaffold00047.33 0.8710885178742223 74 AMTR_s00177p00036720 evm_27.TU.AmTr_v1.0_scaffold00177.14 0.8693306877755926 75 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.8690961149685649 76 AMTR_s00002p00146270 Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.110 0.8690590824225579 77 AMTR_s00174p00049820 Probable methyltransferase PMT9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00174.18 0.8688895110804894 79 AMTR_s00135p00058090 Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00135.24 0.8687206867025162 80 AMTR_s00039p00197260 Cytoskeleton.microfilament network.actin polymerisation.Arp2/3 actin polymerization initiation complex.ArpC1 component evm_27.TU.AmTr_v1.0_scaffold00039.162 0.8682972598644836 81 AMTR_s00092p00111470 Solute transport.carrier-mediated transport.MFS superfamily.SP family.inositol transporter (INT-type) evm_27.TU.AmTr_v1.0_scaffold00092.69 0.8677674310875111 84 AMTR_s00022p00242310 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.351 0.8655112021972606 87 AMTR_s00014p00086740 Amino acid metabolism.degradation.arginine.urease accessory protein activities.ureG-type urease accessory protein evm_27.TU.AmTr_v1.0_scaffold00014.25 0.8654666499604675 88 AMTR_s00132p00065700 RNA biosynthesis.transcriptional activation.bZIP superfamily.bZIP transcription factor evm_27.TU.AmTr_v1.0_scaffold00132.19 0.864548688017565 90 AMTR_s00085p00110520 evm_27.TU.AmTr_v1.0_scaffold00085.68 0.8645071431462924 91 AMTR_s00123p00013920 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.uroporphyrinogen III synthase evm_27.TU.AmTr_v1.0_scaffold00123.1 0.8638481348512254 92 AMTR_s00109p00140320 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00109.150 0.8637023220591865 93 AMTR_s00031p00080280 Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.31 0.8634112628990713 94 AMTR_s00025p00112220 Endo-1,3;1,4-beta-D-glucanase OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00025.100 0.8632647349277534 95 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8623752561662915 97 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00110.17 0.862071933493188 98 AMTR_s00003p00129460 Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.96 0.8613465185541449 99 AMTR_s00064p00187430 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00064.82 0.8611376426296662 100