Sequence Description Alias PCC hrr AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9482466820089994 7 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9448182576740387 6 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9444343179065007 6 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9343889074524822 18 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.9335919989770428 8 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.9309807759700571 12 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.9302670182142163 7 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9278738063442807 21 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.9238912002447011 11 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9231049174238409 11 AMTR_s00029p00083110 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein evm_27.TU.AmTr_v1.0_scaffold00029.76 0.9217544345413774 11 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9207774524232658 12 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.9205631344540255 13 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.9203919194443057 14 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component evm_27.TU.AmTr_v1.0_scaffold00003.203 0.9192723953058799 15 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9188013080079369 35 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9167394804252653 17 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.9163829788153635 18 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9132687039982499 58 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9127328817599314 59 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.910297985681909 21 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9102135527051579 51 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9085159757390936 29 AMTR_s00022p00253640 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.CCD carotenoid cleavage dioxygenase evm_27.TU.AmTr_v1.0_scaffold00022.401 0.9081774954967844 24 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.9078844375134725 25 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9075566716188137 26 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9074980028394488 38 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.9071129545892831 28 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.9069391812423367 29 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.9063283163786727 36 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9051444787167141 52 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9038417463414431 53 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00058.152 0.9036880339803417 33 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase evm_27.TU.AmTr_v1.0_scaffold00001.484 0.903540246087461 34 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.9031398327936168 35 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.9028397632173433 36 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9027753954646844 61 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.902484658744832 38 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9019322192443913 42 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9016438317297042 40 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.9013269650582745 41 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.8997033796661859 46 AMTR_s00145p00071320 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PPL1 protein evm_27.TU.AmTr_v1.0_scaffold00145.26 0.8988457892383435 43 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.8973388582328317 83 AMTR_s00069p00125390 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 evm_27.TU.AmTr_v1.0_scaffold00069.85 0.8972661101144213 46 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.8954896038784534 47 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.8943135493702016 58 AMTR_s00045p00150380 Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.162 0.894064136220676 50 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8933110692393925 51 AMTR_s00013p00259510 Chloroplast envelope quinone oxidoreductase homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.264 0.893281084310354 52 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8930971553743712 65 AMTR_s00048p00192820 evm_27.TU.AmTr_v1.0_scaffold00048.152 0.8918361432248291 54 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8916145050701958 55 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8911353657608908 64 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.21 0.8905668105310458 64 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.8899567370266928 58 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.8899228308176486 60 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00075.28 0.8897671617683249 60 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.8867793557443838 67 AMTR_s00216p00022320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphtoate-phytyltransferase evm_27.TU.AmTr_v1.0_scaffold00216.3 0.8865530075150213 62 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8865229133828415 63 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8863682540342553 89 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.8859971042128508 68 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.8855506592884106 88 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.8853966012374421 67 AMTR_s00069p00137820 evm_27.TU.AmTr_v1.0_scaffold00069.102 0.8843985006584233 68 AMTR_s00013p00209880 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL18 component evm_27.TU.AmTr_v1.0_scaffold00013.145 0.8840135962661607 69 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.8833982022971728 71 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8825771406121637 73 AMTR_s00044p00105130 evm_27.TU.AmTr_v1.0_scaffold00044.75 0.8813251442158966 81 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8812974097283459 75 AMTR_s00051p00066360 Cell cycle.regulation.cyclins.CYL1-type cyclin evm_27.TU.AmTr_v1.0_scaffold00051.24 0.8812066771113509 76 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8791350785737988 78 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8786450290355068 79 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.8783198746847731 80 AMTR_s00009p00263380 Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.358 0.8781880962878957 81 AMTR_s00043p00168880 BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00043.37 0.8773666114940698 82 AMTR_s00156p00076210 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL15 component evm_27.TU.AmTr_v1.0_scaffold00156.37 0.8766474786006025 83 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.8759602534234215 89 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.204 0.8756866109091185 85 AMTR_s00019p00144790 evm_27.TU.AmTr_v1.0_scaffold00019.131 0.875329047798098 86 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.8752914280479807 87 AMTR_s00016p00227430 Multi-process regulation.circadian clock.morning element regulation.TCP20 activation factor evm_27.TU.AmTr_v1.0_scaffold00016.212 0.8749184603669519 88 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8743305186912071 90 AMTR_s00061p00142700 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00061.123 0.8728180694707762 93 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase evm_27.TU.AmTr_v1.0_scaffold00176.30 0.8700951902879807 100