Sequence Description Alias PCC hrr GSVIVT01009834001 Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana 0.9110183703210204 1 GSVIVT01026933001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED12 component 0.88637712550057 8 GSVIVT01028685001 Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana 0.8863595368655043 8 GSVIVT01018721001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component 0.8811562318294466 4 GSVIVT01007806001 0.8729685594401236 8 GSVIVT01029442001 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor 0.8701394013526853 12 GSVIVT01016309001 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.PWR component 0.869706921146808 12 GSVIVT01025465001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component 0.8674754539855826 8 GSVIVT01018154001 0.8665790549376772 9 GSVIVT01011100001 RNA biosynthesis.transcriptional activation.HUA2 transcription factor 0.8655053333722551 10 GSVIVT01018783001 Protein modification.phosphorylation.atypical kinase families.PIKK kinase 0.8619359491375629 11 GSVIVT01033231001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor 0.858545758791098 22 GSVIVT01010842001 Flowering time control protein FPA OS=Arabidopsis thaliana 0.8562426211983913 13 GSVIVT01007885001 0.8538976667746726 26 GSVIVT01020162001 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component 0.8466911269336103 15 GSVIVT01030649001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component 0.8431625159403311 33 GSVIVT01033511001 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana 0.838315287212923 67 GSVIVT01016889001 0.8377359459642939 18 GSVIVT01005756001 0.8375715923697307 19 GSVIVT01017820001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor 0.8348789488196645 20 GSVIVT01007917001 0.833516861676141 29 GSVIVT01011619001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component 0.8333132090860189 44 GSVIVT01036514001 0.828496654669879 23 GSVIVT01023517001 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor 0.8274161348376011 24 GSVIVT01009695001 0.8255964359003306 57 GSVIVT01022256001 0.8244794483610736 26 GSVIVT01031879001 Protein modification.phosphorylation.atypical kinase families.PIKK kinase 0.8244095053656848 57 GSVIVT01025470001 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease 0.8243427435030133 99 GSVIVT01008230001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component 0.823728696846811 29 GSVIVT01025073001 0.8224250833857895 30 GSVIVT01016716001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.SPT20/ADA5 component 0.822373798007629 31 GSVIVT01008944001 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.8217145999910984 36 GSVIVT01000835001 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.MAC7 component 0.821626715419087 51 GSVIVT01029441001 0.8214228650677321 34 GSVIVT01009194001 BEACH domain-containing protein B OS=Arabidopsis thaliana 0.8179178171661212 35 GSVIVT01008802001 RNA processing.RNA decay.exosome complex.associated co-factors.SOP1 RNA degradation surveillance factor 0.8174613746920619 36 GSVIVT01019359001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TATA box-binding protein (TBP) regulation.TBP-associated factor (MOT1) 0.8160536117014948 91 GSVIVT01026952001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor 0.8107990783668542 63 GSVIVT01032923001 0.8095486625761625 43 GSVIVT01016589001 0.808497390310512 40 GSVIVT01017853001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component 0.8071660136099813 41 GSVIVT01031321001 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana 0.8066771846302938 42 GSVIVT01024708001 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain 0.8060136319825902 87 GSVIVT01008805001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class II/ASH1 histone methyltransferase component 0.8006546323143471 44 GSVIVT01028117001 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii 0.7999785397189999 45 GSVIVT01012774001 Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana 0.7953569472541473 58 GSVIVT01016353001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component 0.7952467981565735 73 GSVIVT01033179001 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.7936515347845716 49 GSVIVT01012044001 0.7935185117121534 50 GSVIVT01021781001 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED14 component 0.7932241413712117 51 GSVIVT01002823001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.7918024511923718 52 GSVIVT01015158001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.ADA3 component 0.7916838786133946 62 GSVIVT01037231001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.7905647619784485 54 GSVIVT01019046001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component 0.7888534592454863 78 GSVIVT01016617001 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter 0.7875419637844014 56 GSVIVT01027983001 ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana 0.7870379063128574 57 GSVIVT01024906001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.SRm160 component 0.7857294133212565 59 GSVIVT01016794001 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.REA1 assembly factor (MDN1) 0.7853644054599694 60 GSVIVT01010769001 DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana 0.7846674731122861 89 GSVIVT01030107001 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana 0.7846416335146155 62 GSVIVT01003381001 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component 0.7830831700038777 98 GSVIVT01030055001 Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana 0.7814461576921384 66 GSVIVT01035727001 0.7774136084190107 85 GSVIVT01037235001 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.CHR5 component 0.7769063786129734 76 GSVIVT01022139001 0.7767880280315062 70 GSVIVT01011514001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin 0.7750054497805111 71 GSVIVT01007875001 DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana 0.7743222295062049 72 GSVIVT01013247001 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).UPF1 effector protein 0.7718783588357354 76 GSVIVT01012049001 RNA biosynthesis.transcriptional activation.HUA2 transcription factor 0.7695849627163156 77 GSVIVT01008473001 Protein modification.phosphorylation.AGC kinase superfamily.MAST kinase 0.7694584248719678 78 GSVIVT01009208001 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.7691237245667399 79 GSVIVT01011916001 Protein modification.phosphorylation.CMGC kinase superfamily.DYRK kinase 0.7660744242567876 81 GSVIVT01002731001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.7625989437653018 84 GSVIVT01019675001 0.7615548158926401 87 GSVIVT01025102001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT4 component 0.7613884470003679 86 GSVIVT01022257001 0.7589286170894336 88 GSVIVT01018331001 Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana 0.7585300113025214 89 GSVIVT01025216001 Helicase protein MOM1 OS=Arabidopsis thaliana 0.7580501654641129 91 GSVIVT01000087001 DNA damage response.DNA repair polymerase activities.DNA polymerase zeta complex.REV3 catalytic subunit 0.7572164378885059 93 GSVIVT01037358001 Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana 0.7569988676496879 94 GSVIVT01001859001 0.7563590013292043 96 GSVIVT01034167001 E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana 0.7562367661305985 97 GSVIVT01032657001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor 0.7545478001603131 98