Sequence Description Alias PCC hrr AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.9669328919439844 1 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.9581215828233719 2 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.204 0.9438055921317872 3 AMTR_s00001p00272260 Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.510 0.9404637956959319 13 AMTR_s00027p00217960 Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.81 0.9362395041321923 8 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00058.152 0.9354113138121927 6 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.9334675949335673 10 AMTR_s00103p00071860 Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (ERD6-type) evm_27.TU.AmTr_v1.0_scaffold00103.38 0.9282759709933566 8 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.9277679972703448 9 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.9178427386949319 37 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9173713714581299 23 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00021.188 0.9170842352043933 12 AMTR_s00025p00146930 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.pyruvate orthophosphate dikinase evm_27.TU.AmTr_v1.0_scaffold00025.163 0.9163850962915316 13 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.9134603112680603 20 AMTR_s00101p00054450 evm_27.TU.AmTr_v1.0_scaffold00101.26 0.9116300497831626 15 AMTR_s00014p00133450 Bifunctional nuclease 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00014.49 0.9114728358838401 16 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component evm_27.TU.AmTr_v1.0_scaffold00010.515 0.9109574441929874 25 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase evm_27.TU.AmTr_v1.0_scaffold00117.15 0.9107734261195586 18 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.9085696434551784 19 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9079334798070574 25 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.9069665232695574 34 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component evm_27.TU.AmTr_v1.0_scaffold00019.332 0.9067270356588365 22 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9062553861870523 41 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9061256311064669 64 AMTR_s00101p00054740 evm_27.TU.AmTr_v1.0_scaffold00101.27 0.9044179042690803 25 AMTR_s00013p00180670 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa2-type component evm_27.TU.AmTr_v1.0_scaffold00013.107 0.9042165366130169 31 AMTR_s00109p00068030 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaH evm_27.TU.AmTr_v1.0_scaffold00109.52 0.9014134944495967 42 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component evm_27.TU.AmTr_v1.0_scaffold00142.34 0.8985253297159791 59 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.8958896733128437 64 AMTR_s00024p00180920 evm_27.TU.AmTr_v1.0_scaffold00024.142 0.8956487242795347 30 AMTR_s00069p00125390 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 evm_27.TU.AmTr_v1.0_scaffold00069.85 0.8915366000981118 31 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.8896179354582197 46 AMTR_s00176p00047500 evm_27.TU.AmTr_v1.0_scaffold00176.21 0.888159711474415 33 AMTR_s00006p00257020 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CIB transcriptional regulator evm_27.TU.AmTr_v1.0_scaffold00006.196 0.887388263042406 34 AMTR_s00044p00105130 evm_27.TU.AmTr_v1.0_scaffold00044.75 0.8873575555952815 68 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00002.387 0.8872991412850129 37 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.8843933540893112 89 AMTR_s00045p00150380 Ferredoxin C 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.162 0.8837637078474944 40 AMTR_s00044p00085200 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.57 0.8828803675373204 39 AMTR_s00049p00119540 Redox homeostasis.chloroplast redox homeostasis.F-type thioredoxin evm_27.TU.AmTr_v1.0_scaffold00049.94 0.8824213048682118 46 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.8817661097435089 90 AMTR_s00002p00267790 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB5/NDH18 component evm_27.TU.AmTr_v1.0_scaffold00002.530 0.8812166755858738 42 AMTR_s00070p00131360 evm_27.TU.AmTr_v1.0_scaffold00070.71 0.8809155059873025 43 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.8804433602366946 57 AMTR_s00175p00040360 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa1-type component evm_27.TU.AmTr_v1.0_scaffold00175.14 0.8793316458630664 50 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.879201938748326 68 AMTR_s00056p00209700 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00056.200 0.8789605155778729 47 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8764958877441461 75 AMTR_s00018p00092490 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaO evm_27.TU.AmTr_v1.0_scaffold00018.41 0.8763065431483715 49 AMTR_s00061p00164910 Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum evm_27.TU.AmTr_v1.0_scaffold00061.164 0.8757335295064475 50 AMTR_s00034p00145870 evm_27.TU.AmTr_v1.0_scaffold00034.44 0.8755669497025206 51 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8748847541276552 91 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein evm_27.TU.AmTr_v1.0_scaffold00004.48 0.8743923998389747 96 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.21 0.8738020160483639 94 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8731636800426569 56 AMTR_s00149p00069450 evm_27.TU.AmTr_v1.0_scaffold00149.48 0.8731003620704721 57 AMTR_s00043p00168880 BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00043.37 0.871503441934643 58 AMTR_s00007p00076840 Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.41 0.8713464593768161 59 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component evm_27.TU.AmTr_v1.0_scaffold00029.405 0.8711337216286542 100 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase evm_27.TU.AmTr_v1.0_scaffold00001.484 0.8708376512922529 94 AMTR_s00032p00148610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbTn evm_27.TU.AmTr_v1.0_scaffold00032.114 0.8706208607863383 66 AMTR_s00092p00149880 Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.118 0.8702400462626039 63 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.866725243375834 72 AMTR_s00029p00095840 Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.88 0.8663837499208604 68 AMTR_s00016p00166750 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR regulation.LIR1 protein evm_27.TU.AmTr_v1.0_scaffold00016.125 0.8656088493138512 69 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.8655249862939427 90 AMTR_s00061p00050550 evm_27.TU.AmTr_v1.0_scaffold00061.27 0.8654717898707727 71 AMTR_s00099p00064280 evm_27.TU.AmTr_v1.0_scaffold00099.43 0.8650992558063157 73 AMTR_s00101p00121540 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.95 0.8645126411765437 86 AMTR_s00069p00137820 evm_27.TU.AmTr_v1.0_scaffold00069.102 0.8643213967311374 75 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.57 0.8618703898004162 76 AMTR_s00024p00252620 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00024.350 0.8608628183615602 78 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.8607041453883283 86 AMTR_s00115p00062270 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.Y3IP1 protein evm_27.TU.AmTr_v1.0_scaffold00115.3 0.8594736059515603 84 AMTR_s00013p00259510 Chloroplast envelope quinone oxidoreductase homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.264 0.856566348574218 89 AMTR_s00023p00176320 Embryo-specific protein ATS3B OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.110 0.855719379042147 91 AMTR_s00039p00114830 evm_27.TU.AmTr_v1.0_scaffold00039.71 0.8552995432497587 92 AMTR_s00019p00167210 evm_27.TU.AmTr_v1.0_scaffold00019.163 0.8528951381098647 96 AMTR_s00104p00098970 evm_27.TU.AmTr_v1.0_scaffold00104.36 0.8525112348703092 97 AMTR_s00019p00027190 APO protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.6 0.8523543073746593 99