Sequence Description Alias PCC hrr AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.9354834665036881 4 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase evm_27.TU.AmTr_v1.0_scaffold00065.18 0.9344718582414233 2 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9307175740462738 28 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.928434527458397 4 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase evm_27.TU.AmTr_v1.0_scaffold00076.7 0.9253202308535783 7 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase evm_27.TU.AmTr_v1.0_scaffold00152.29 0.9210787762552689 21 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.9208187945687708 15 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component evm_27.TU.AmTr_v1.0_scaffold00061.187 0.920330368020375 18 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9193650423074928 18 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9176700758712047 23 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase evm_27.TU.AmTr_v1.0_scaffold00048.87 0.9170889218060281 14 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component evm_27.TU.AmTr_v1.0_scaffold00029.338 0.9156170406887295 24 AMTR_s00032p00222720 Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00032.231 0.9155433245725134 13 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9152454024962172 20 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9149789012252354 16 AMTR_s00107p00150560 evm_27.TU.AmTr_v1.0_scaffold00107.45 0.9141934058362997 16 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.9138427425606419 30 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00001.249 0.9126199234102272 18 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component evm_27.TU.AmTr_v1.0_scaffold00142.34 0.9088616513883715 36 AMTR_s00059p00176390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO evm_27.TU.AmTr_v1.0_scaffold00059.181 0.9084110659298652 44 AMTR_s00022p00242310 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.351 0.9080542800602319 21 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9077696861785501 50 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9074624515837079 51 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.907174008457549 64 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component evm_27.TU.AmTr_v1.0_scaffold00001.191 0.9066723346104248 35 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9062809203535812 50 AMTR_s00058p00188880 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00058.187 0.906227046358563 27 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component evm_27.TU.AmTr_v1.0_scaffold00098.43 0.9055676608632062 37 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein evm_27.TU.AmTr_v1.0_scaffold00025.118 0.9043003564625832 62 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase evm_27.TU.AmTr_v1.0_scaffold00029.342 0.9040518563373342 30 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.9038738517209071 35 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9017280501580237 90 AMTR_s00149p00098530 evm_27.TU.AmTr_v1.0_scaffold00149.83 0.9006882598340702 33 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00016.302 0.8998581640577196 52 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.8994850695291451 65 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component evm_27.TU.AmTr_v1.0_scaffold00012.301 0.8994307225382303 85 AMTR_s00099p00023240 evm_27.TU.AmTr_v1.0_scaffold00099.10 0.8989751861936076 37 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor evm_27.TU.AmTr_v1.0_scaffold00109.135 0.8961167984274269 48 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.8937630739314171 39 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.8921578272659629 77 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00010.221 0.8910642828086365 48 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor evm_27.TU.AmTr_v1.0_scaffold00059.198 0.8905338783731329 42 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8898386965477301 43 AMTR_s00061p00059490 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa3-type component evm_27.TU.AmTr_v1.0_scaffold00061.34 0.8897412184813691 53 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.8881158544488492 56 AMTR_s00048p00138430 Solute transport.carrier-mediated transport.PLGG1 glycerate:glycolate transporter evm_27.TU.AmTr_v1.0_scaffold00048.86 0.8867405205024033 46 AMTR_s00001p00188890 Carbohydrate metabolism.starch metabolism.synthesis.plastidial phosphoglucomutase evm_27.TU.AmTr_v1.0_scaffold00001.187 0.8857381805246374 47 AMTR_s00099p00029990 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb33 protein evm_27.TU.AmTr_v1.0_scaffold00099.15 0.8856532731735013 48 AMTR_s00008p00223050 Protein OBERON 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.141 0.8840656603380512 49 AMTR_s00024p00248370 evm_27.TU.AmTr_v1.0_scaffold00024.319 0.8838666089475788 50 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) evm_27.TU.AmTr_v1.0_scaffold00005.125 0.8834749592680571 51 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8826201355274849 52 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.8825941935399386 74 AMTR_s00009p00163120 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00009.90 0.8823128055712572 55 AMTR_s00010p00265990 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL2/PQL1 component evm_27.TU.AmTr_v1.0_scaffold00010.518 0.8819842640497557 56 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component evm_27.TU.AmTr_v1.0_scaffold00099.124 0.8816588056617204 68 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein evm_27.TU.AmTr_v1.0_scaffold00004.48 0.8814128029096886 76 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8808600678166799 59 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase evm_27.TU.AmTr_v1.0_scaffold00059.146 0.880834347063738 77 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.8800610883180219 99 AMTR_s00062p00201460 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor evm_27.TU.AmTr_v1.0_scaffold00062.212 0.8795219239788675 63 AMTR_s00078p00063510 Photosynthesis.calvin cycle.phosphopentose epimerase evm_27.TU.AmTr_v1.0_scaffold00078.34 0.8790723295721738 64 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8789939937120775 65 AMTR_s00063p00191490 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase evm_27.TU.AmTr_v1.0_scaffold00063.73 0.8788785703640216 66 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component evm_27.TU.AmTr_v1.0_scaffold00029.405 0.8781597909781895 88 AMTR_s00022p00051940 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00022.32 0.8780107200820623 69 AMTR_s00092p00018230 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.4 0.8778403448208921 84 AMTR_s00022p00242510 Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.352 0.8776105550050944 71 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase evm_27.TU.AmTr_v1.0_scaffold00101.37 0.8770437967213368 89 AMTR_s00104p00098970 evm_27.TU.AmTr_v1.0_scaffold00104.36 0.8768017195848254 73 AMTR_s00022p00205270 Phytohormones.jasmonic acid.synthesis.13-lipoxygenase evm_27.TU.AmTr_v1.0_scaffold00022.242 0.8754586195998545 74 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8752312432934071 92 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8748356265873397 83 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8743881665614444 100 AMTR_s00001p00147850 Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.130 0.8741481313820401 78 AMTR_s00011p00245550 Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.144 0.8736187829406328 79 AMTR_s00058p00182650 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00058.174 0.8734027299739697 80 AMTR_s00012p00255610 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.291 0.8732431071246519 81 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8727154019933502 82 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD evm_27.TU.AmTr_v1.0_scaffold00103.18 0.8715374753116721 84 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG evm_27.TU.AmTr_v1.0_scaffold00061.40 0.8713522059238533 85 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8713379188762422 86 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component evm_27.TU.AmTr_v1.0_scaffold00010.88 0.8711170421543765 88 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8709891107436207 89 AMTR_s00045p00175560 Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.209 0.8702893503105472 90 AMTR_s00095p00166740 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor evm_27.TU.AmTr_v1.0_scaffold00095.146 0.8697066348058002 91 AMTR_s00039p00129550 Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00039.82 0.869154343579201 92 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8682684107678221 93 AMTR_s00022p00232380 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit delta evm_27.TU.AmTr_v1.0_scaffold00022.315 0.8680587105699025 100 AMTR_s00046p00219150 Photosynthesis.photorespiration.serine hydroxymethyltransferase evm_27.TU.AmTr_v1.0_scaffold00046.151 0.8679478117623477 95 AMTR_s00025p00146930 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.pyruvate orthophosphate dikinase evm_27.TU.AmTr_v1.0_scaffold00025.163 0.8678697330928506 96 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.8676043311601145 97 AMTR_s00067p00206610 evm_27.TU.AmTr_v1.0_scaffold00067.230 0.8673704690639491 98 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.8664827324746203 99 AMTR_s00033p00142400 evm_27.TU.AmTr_v1.0_scaffold00033.84 0.8664282777805976 100