Sequence Description Alias PCC hrr AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9371351423792579 1 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.78 0.93263165132031 8 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.9295690034346988 3 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9277223635243258 8 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.927423190470632 10 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.9259521811804697 6 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9249474779961196 14 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.9247411287526888 11 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.9240006643379209 9 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9232092827410863 26 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9229768431988233 11 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9210830644888701 17 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00078.76 0.9207944475995058 13 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9184168578977289 43 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9181578780167816 16 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9169268265612596 24 AMTR_s00011p00265800 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.222 0.9152573056452745 17 AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.915094782697474 18 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9149837800194693 29 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9147620119882458 20 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase evm_27.TU.AmTr_v1.0_scaffold00101.37 0.91405323547002 21 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9138168942495096 35 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00203.3 0.913781576518046 23 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00065.7 0.9130474192369568 24 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.9111180626712585 25 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.9109747145386073 26 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9109467387557468 34 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9107372842161703 52 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9094587390014057 50 AMTR_s00058p00186720 Protein KINESIN LIGHT CHAIN-RELATED 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.182 0.9088157640424595 30 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00069.157 0.9067428439014619 31 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.9066026832990187 32 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.906497948745847 51 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.9054384401978319 34 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9050726763499798 44 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9045225110231425 36 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase evm_27.TU.AmTr_v1.0_scaffold00004.78 0.9030977398754961 37 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein evm_27.TU.AmTr_v1.0_scaffold00121.36 0.9029841729180595 38 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9025021660947945 39 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase evm_27.TU.AmTr_v1.0_scaffold00060.3 0.9024346739100538 40 AMTR_s00045p00149950 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.161 0.9021230740107598 41 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.901948603864258 42 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00117.48 0.9009176069347137 43 AMTR_s00032p00234570 Protein SMG7L OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.265 0.9001147480183312 44 AMTR_s00004p00076010 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.59 0.89892034786351 45 AMTR_s00112p00086310 evm_27.TU.AmTr_v1.0_scaffold00112.21 0.8985201058243847 72 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.8985070791020778 47 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8979482358277296 49 AMTR_s00039p00132380 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00039.90 0.8968359124626438 50 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8965015603910004 54 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.8963706420401621 54 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.8961141555327239 87 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.8957882843070947 54 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.8955993927479834 55 AMTR_s00042p00226140 evm_27.TU.AmTr_v1.0_scaffold00042.76 0.8952612540119527 70 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.894919955179087 57 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8943769998141605 58 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8939167818299668 59 AMTR_s00072p00151180 Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.87 0.8938290623296578 60 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8938279223648102 61 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.8938101513668353 62 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.8934952571939391 74 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.89254190014887 65 AMTR_s00012p00252800 Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.262 0.8904267144892087 66 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.8902960339457123 68 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8900402839993996 69 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase evm_27.TU.AmTr_v1.0_scaffold00167.23 0.8897925326157317 70 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8894082874614411 71 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.88939414065193 72 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8893307396875277 73 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.8888543657789224 74 AMTR_s00049p00131450 Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.110 0.8885017092089804 76 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8884601096186318 86 AMTR_s00052p00118920 Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00052.39 0.8881621552355826 78 AMTR_s00012p00060770 Redox homeostasis.low-molecular-weight scavengers.glutathione metabolism.glutathione degradation.oxoprolinase evm_27.TU.AmTr_v1.0_scaffold00012.23 0.8880172989749006 79 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8879485472252407 80 AMTR_s00092p00111470 Solute transport.carrier-mediated transport.MFS superfamily.SP family.inositol transporter (INT-type) evm_27.TU.AmTr_v1.0_scaffold00092.69 0.8879141650997973 81 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8875183444253202 82 AMTR_s00044p00102360 Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula evm_27.TU.AmTr_v1.0_scaffold00044.72 0.8874256231286016 83 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8856048626462022 84 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase evm_27.TU.AmTr_v1.0_scaffold00016.149 0.8849150522597254 85 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8847339877530608 86 AMTR_s00014p00068600 Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00014.19 0.8846168019397486 93 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8841669840975273 97 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8840722058390675 91 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.882792114051904 92 AMTR_s00102p00057640 evm_27.TU.AmTr_v1.0_scaffold00102.25 0.8818606744096736 94 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8816017073283262 95 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8815504399027427 96 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8809124974963258 97 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00040.184 0.8805304165695492 98 AMTR_s00101p00049040 evm_27.TU.AmTr_v1.0_scaffold00101.20 0.8803873077604132 99 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8801730008838962 100