Sequence Description Alias PCC hrr AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9564865122398578 2 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.9465096671946017 3 AMTR_s00009p00241540 RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00009.218 0.9423383869509813 5 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9394346565182766 7 AMTR_s00062p00065360 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).LCNP NPQ-regulator lipocalin evm_27.TU.AmTr_v1.0_scaffold00062.38 0.9383847125728002 5 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component evm_27.TU.AmTr_v1.0_scaffold00044.9 0.9336336185170122 7 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9315897774039261 7 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.9295920458447253 8 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.928723162614709 31 AMTR_s00061p00142700 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00061.123 0.9280911914726174 10 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.9273450263848602 11 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9270328325039624 26 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.9269059480833107 13 AMTR_s00015p00257490 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.FNR membrane-tethering.TROL protein evm_27.TU.AmTr_v1.0_scaffold00015.112 0.9268562653315419 14 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9243535839862544 24 AMTR_s00024p00252900 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.MPH2 acclimation factor evm_27.TU.AmTr_v1.0_scaffold00024.352 0.9234815637043383 16 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.922211743299082 17 AMTR_s00057p00188930 GTP-binding protein OBGC, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.204 0.9196737189495758 18 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.9158709310967648 19 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9147491323787144 20 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9140474220610854 54 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.913452768084141 40 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.9133650131813159 23 AMTR_s00147p00104660 evm_27.TU.AmTr_v1.0_scaffold00147.61 0.913085541614068 24 AMTR_s00010p00259680 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00010.427 0.9122387462434833 25 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.9118225093992148 26 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.9098270974822135 27 AMTR_s00023p00031940 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.SLP phosphatase evm_27.TU.AmTr_v1.0_scaffold00023.9 0.9089016721224051 28 AMTR_s00019p00227810 ACT domain-containing protein ACR11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.297 0.9087985769437251 29 AMTR_s00013p00241300 evm_27.TU.AmTr_v1.0_scaffold00013.201 0.9086969685041172 30 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.9059859041964001 46 AMTR_s00004p00110090 Protein modification.phosphorylation.TKL kinase superfamily.LRR-VI kinase families.LRR-VI-1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.89 0.9052295956278877 52 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.9038513984258721 33 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9030384798793677 35 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9027084145252119 44 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9023896454764878 77 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.9012314171731892 45 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.9011762193591271 38 AMTR_s00039p00213540 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psPSRP5 component evm_27.TU.AmTr_v1.0_scaffold00039.184 0.9009310111179792 39 AMTR_s00024p00220830 evm_27.TU.AmTr_v1.0_scaffold00024.217 0.9006586578984199 40 AMTR_s00069p00149060 evm_27.TU.AmTr_v1.0_scaffold00069.116 0.9000689999073768 41 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8993568197607527 42 AMTR_s00059p00121300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NOL component evm_27.TU.AmTr_v1.0_scaffold00059.95 0.8987770113312554 43 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.8985670469365258 78 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8984368797048945 59 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.8979709031228232 67 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8973208996991848 47 AMTR_s00032p00109160 Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase evm_27.TU.AmTr_v1.0_scaffold00032.70 0.8972103025583157 48 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8970697254396559 73 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.8961065532275786 52 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.8955773327820842 71 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8948150222758511 52 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.8927542029146041 92 AMTR_s00148p00069790 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VIII kinase families.RLCK-VIII-sis kinase evm_27.TU.AmTr_v1.0_scaffold00148.43 0.8919805797628353 55 AMTR_s00004p00143390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00004.140 0.8918699844722121 94 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.8917527549047048 85 AMTR_s00057p00162170 Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.151 0.8910519655508855 58 AMTR_s00008p00202090 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.120 0.8905078569784595 59 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.8899228308176486 60 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8895628603199761 61 AMTR_s00103p00070570 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor evm_27.TU.AmTr_v1.0_scaffold00103.36 0.889553487401991 62 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.8883088542474133 63 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.887088545682001 68 AMTR_s00002p00244810 RNA processing.RNA modification.pseudouridylation.Pus10-type tRNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00002.325 0.886954155210328 66 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.8869143655849965 78 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.8860299942688704 68 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase evm_27.TU.AmTr_v1.0_scaffold00176.30 0.8859128825027492 69 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8853404998725117 70 AMTR_s00071p00184210 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.189 0.8853245763702619 71 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8830829739866355 72 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8823935796892404 73 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.8823194004441447 74 AMTR_s00006p00260630 Protein degradation.peptidase families.serine-type peptidase activities.SppA plastidial protease evm_27.TU.AmTr_v1.0_scaffold00006.223 0.88226948495969 75 AMTR_s00012p00224800 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter evm_27.TU.AmTr_v1.0_scaffold00012.174 0.8816743831665854 76 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8816435849451931 77 AMTR_s00109p00050280 Protein modification.peptide maturation.plastid.PLSP/TPP plastidic signal peptidase evm_27.TU.AmTr_v1.0_scaffold00109.36 0.8808842305215404 78 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.8803048512598288 80 AMTR_s00078p00106750 Phytohormones.salicylic acid.synthesis.isochorismate synthase evm_27.TU.AmTr_v1.0_scaffold00078.78 0.8802421698358633 81 AMTR_s00175p00056960 Solute transport.carrier-mediated transport.APC superfamily.HAAAP-type aromatic amino acid transporter evm_27.TU.AmTr_v1.0_scaffold00175.29 0.8798696398269097 84 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component evm_27.TU.AmTr_v1.0_scaffold00013.7 0.8794249500226597 85 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.8791657730103892 86 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.8791426595396526 87 AMTR_s00012p00251230 evm_27.TU.AmTr_v1.0_scaffold00012.252 0.8787734652815913 88 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00110.101 0.8786723544343514 89 AMTR_s00030p00229140 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.typical 2-Cys peroxiredoxin (2-CysPrx) evm_27.TU.AmTr_v1.0_scaffold00030.180 0.8783369583665863 91 AMTR_s00065p00020910 Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.6 0.8780725528570311 93 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8780657793900413 94 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8766643217481285 96