Sequence Description Alias PCC hrr AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.9566573892722692 2 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.9402964564586273 2 AMTR_s00003p00268300 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.397 0.9318836771266359 5 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.9306822670904169 4 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9304749808900302 5 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.9232029853089834 7 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.9210578135388975 9 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.9202964017700097 8 AMTR_s00090p00120760 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00090.59 0.9183169341637621 9 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00002.176 0.9167695203955715 15 AMTR_s00007p00259840 evm_27.TU.AmTr_v1.0_scaffold00007.320 0.9164557465284118 11 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9154300307247806 30 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9144454537646167 48 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9139107523672708 19 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.9130676447558741 15 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9108217833771651 17 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9105098812359735 27 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.9088817744359807 18 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.908836993031826 28 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9058818356624347 61 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9042567759057215 60 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.903929132377552 33 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00062.184 0.9036353855702848 23 AMTR_s00016p00187060 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase evm_27.TU.AmTr_v1.0_scaffold00016.149 0.9011750647016585 24 AMTR_s00092p00157010 Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.132 0.901149713015446 27 AMTR_s00066p00130420 Rhodanese-like domain-containing protein 4A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.123 0.9006283832334008 26 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9003904811250257 30 AMTR_s00049p00163880 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.150 0.9001233018657494 28 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.8999722232636032 29 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component evm_27.TU.AmTr_v1.0_scaffold00071.178 0.8975833921242502 74 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8975410724220441 54 AMTR_s00109p00140320 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00109.150 0.8965974817804162 32 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.8963723081438547 33 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component evm_27.TU.AmTr_v1.0_scaffold00009.196 0.8956550568896415 45 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.8956381537283717 49 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.8954700442105222 42 AMTR_s00067p00038470 evm_27.TU.AmTr_v1.0_scaffold00067.21 0.8948442262578169 37 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.8937709709750333 70 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.8929344121598392 39 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8927381007102416 68 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8924123799163208 41 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.8922424296497424 46 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00078.76 0.8919530961822536 43 AMTR_s00029p00193710 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.261 0.8918829253806786 44 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase evm_27.TU.AmTr_v1.0_scaffold00074.38 0.891781399788165 45 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8908646876738495 54 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.8896647835646534 75 AMTR_s00071p00074520 PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.45 0.8892385966267548 48 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8890844490188246 60 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8889558120523698 51 AMTR_s00046p00227230 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.167 0.8878575481771206 51 AMTR_s00019p00172430 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecY1 component evm_27.TU.AmTr_v1.0_scaffold00019.172 0.8872712811585897 52 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00117.48 0.8858023235643219 54 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.8840722058390675 91 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8835813182451998 95 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8832627462864531 72 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.883060848722109 59 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter evm_27.TU.AmTr_v1.0_scaffold00329.2 0.8828348405768325 60 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8816297943741291 91 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein evm_27.TU.AmTr_v1.0_scaffold00045.260 0.8815769454875867 64 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.881487879286447 65 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.8808755137720401 96 AMTR_s00140p00103640 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL9 component evm_27.TU.AmTr_v1.0_scaffold00140.50 0.8806805613488526 69 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.8797789387085595 91 AMTR_s00104p00092530 Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00104.35 0.8791684602997788 72 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00110.101 0.879064591253991 73 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase evm_27.TU.AmTr_v1.0_scaffold00017.263 0.8786890881595663 86 AMTR_s00006p00036530 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.9 0.878288309643744 75 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8779453911016518 76 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.8772506114151574 78 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.8771694935956514 100 AMTR_s00001p00224830 evm_27.TU.AmTr_v1.0_scaffold00001.236 0.8763178049104694 93 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase evm_27.TU.AmTr_v1.0_scaffold00004.78 0.8761131748198137 92 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8760278110792244 98 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase evm_27.TU.AmTr_v1.0_scaffold00059.146 0.8757955078207789 99 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8756452628765796 88 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8747462690416641 97 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase evm_27.TU.AmTr_v1.0_scaffold00055.158 0.8736849257550697 90 AMTR_s00088p00159600 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00088.130 0.8727520857259317 91 AMTR_s00019p00227810 ACT domain-containing protein ACR11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.297 0.8726791163751605 92 AMTR_s00019p00158670 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP5 protein evm_27.TU.AmTr_v1.0_scaffold00019.152 0.8725337759005548 93 AMTR_s00071p00184210 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.189 0.8719817356405958 96 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.871636660946851 98 AMTR_s00033p00075910 evm_27.TU.AmTr_v1.0_scaffold00033.33 0.8715178632877089 99 AMTR_s00078p00158650 evm_27.TU.AmTr_v1.0_scaffold00078.142 0.8710299375521006 100