Sequence Description Alias PCC hrr AMTR_s00092p00090110 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA chromatin transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.50 0.9535695721442365 1 AMTR_s00018p00254940 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.167 0.9415949692954191 2 AMTR_s00109p00118420 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NUG1/NSN1 regulatory GTPase evm_27.TU.AmTr_v1.0_scaffold00109.117 0.9358654782078876 3 AMTR_s00064p00192980 Protein modification.peptide maturation.mitochondrion.MPP mitochondrial signal peptidase heterodimer.beta subunit evm_27.TU.AmTr_v1.0_scaffold00064.89 0.9342598687141944 4 AMTR_s00030p00132070 Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.79 0.9280681695797139 5 AMTR_s00049p00181100 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00049.175 0.9252989510685798 6 AMTR_s00013p00244720 RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00013.205 0.9188078107324823 7 AMTR_s00012p00215820 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP62 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00012.160 0.9146805472982379 8 AMTR_s00058p00069070 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor evm_27.TU.AmTr_v1.0_scaffold00058.31 0.9129007551556589 9 AMTR_s00025p00176430 Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.212 0.9123715814118954 10 AMTR_s00040p00151890 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF12 component evm_27.TU.AmTr_v1.0_scaffold00040.125 0.9086671107884918 11 AMTR_s00032p00149770 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00032.116 0.90791824319041 12 AMTR_s00076p00195870 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00076.86 0.9075562188681552 13 AMTR_s00001p00107630 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT7 eta subunit evm_27.TU.AmTr_v1.0_scaffold00001.74 0.9062432689387916 75 AMTR_s00013p00226180 UPF0235 protein At5g63440 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.170 0.9047757069910939 15 AMTR_s00057p00212890 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN1 regulatory component evm_27.TU.AmTr_v1.0_scaffold00057.266 0.9036675322537917 22 AMTR_s00024p00180690 Splicing factor-like protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.141 0.903466036575335 17 AMTR_s00099p00155770 Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00099.150 0.9033135569397098 18 AMTR_s00068p00041900 evm_27.TU.AmTr_v1.0_scaffold00068.14 0.9004295174302485 19 AMTR_s00047p00118220 evm_27.TU.AmTr_v1.0_scaffold00047.47 0.8999385724956905 20 AMTR_s00002p00165660 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase regulatory protein evm_27.TU.AmTr_v1.0_scaffold00002.139 0.8997469663354032 21 AMTR_s00069p00132220 RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RS31/40/41 splicing factor evm_27.TU.AmTr_v1.0_scaffold00069.94 0.8995894809078733 22 AMTR_s00006p00242700 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.SWA1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00006.119 0.8995239596301399 23 AMTR_s00016p00157950 Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.114 0.8975368855523307 25 AMTR_s00109p00056900 La protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.42 0.8974995730455354 50 AMTR_s00029p00190880 evm_27.TU.AmTr_v1.0_scaffold00029.258 0.8960972707869482 27 AMTR_s00020p00207770 evm_27.TU.AmTr_v1.0_scaffold00020.85 0.8933555797069086 70 AMTR_s00071p00151200 evm_27.TU.AmTr_v1.0_scaffold00071.137 0.8929812085118842 29 AMTR_s00077p00187600 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VII kinase families.RLCK-VIIa kinase evm_27.TU.AmTr_v1.0_scaffold00077.219 0.8918603742140263 30 AMTR_s00119p00021560 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00119.5 0.8918354667495239 51 AMTR_s00025p00204100 Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00025.262 0.8917214091253904 41 AMTR_s00003p00241820 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00003.261 0.8914722573139107 33 AMTR_s00034p00134920 evm_27.TU.AmTr_v1.0_scaffold00034.40 0.8906206295364041 34 AMTR_s00099p00155940 RNA biosynthesis.transcriptional activation.Alfin-like transcription factor evm_27.TU.AmTr_v1.0_scaffold00099.152 0.8890666515433744 35 AMTR_s00089p00034850 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component evm_27.TU.AmTr_v1.0_scaffold00089.9 0.8884702086022974 43 AMTR_s00001p00272900 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana 0.8874853546689405 62 AMTR_s00058p00216470 RNA biosynthesis.transcriptional activation.AP2/ERF superfamily.AP2-type transcription factor evm_27.TU.AmTr_v1.0_scaffold00058.233 0.8872882094549257 38 AMTR_s00059p00183080 Chromatin organisation.histone chaperone activities.NASP-type histone chaperone evm_27.TU.AmTr_v1.0_scaffold00059.197 0.8855139106767559 39 AMTR_s00015p00214470 COP1-interactive protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00015.64 0.885165158421511 40 AMTR_s00021p00105410 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00021.53 0.8849797198073093 41 AMTR_s00005p00263980 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).DDX5 pre-mRNA splicing regulator evm_27.TU.AmTr_v1.0_scaffold00005.216 0.8830892900511258 42 AMTR_s00038p00121420 Phytohormones.abscisic acid.perception and signalling.signal transducer (KEG) evm_27.TU.AmTr_v1.0_scaffold00038.67 0.8818230032631408 43 AMTR_s00005p00226680 RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component evm_27.TU.AmTr_v1.0_scaffold00005.101 0.8817803301574061 44 AMTR_s00021p00185830 Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.145 0.8813919392090872 72 AMTR_s00016p00253700 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component evm_27.TU.AmTr_v1.0_scaffold00016.317 0.8807391401532811 46 AMTR_s00009p00206310 Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group evm_27.TU.AmTr_v1.0_scaffold00009.133 0.8805077217130189 86 AMTR_s00025p00219610 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00025.306 0.8799317374562107 48 AMTR_s00023p00204740 evm_27.TU.AmTr_v1.0_scaffold00023.146 0.8797876703389643 49 AMTR_s00096p00039880 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Mpp10 assembly factor evm_27.TU.AmTr_v1.0_scaffold00096.17 0.8785253046189825 56 AMTR_s00064p00195070 Chaperonin CPN60-1, mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00064.92 0.8776593609412308 55 AMTR_s00011p00222440 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.CCV accessory factors.AUL clathrin uncoating protein evm_27.TU.AmTr_v1.0_scaffold00011.98 0.8774246484105288 89 AMTR_s00004p00169140 Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.189 0.8773832684474946 57 AMTR_s00011p00195950 Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.62 0.8762237902907689 58 AMTR_s00033p00212490 RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor evm_27.TU.AmTr_v1.0_scaffold00033.186 0.8760351786854008 59 AMTR_s00083p00043340 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00083.14 0.8758300533370867 60 AMTR_s00036p00235910 evm_27.TU.AmTr_v1.0_scaffold00036.181 0.8758107764280818 61 AMTR_s00017p00254260 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.MET DNA methyltransferase evm_27.TU.AmTr_v1.0_scaffold00017.270 0.87456319136778 63 AMTR_s00049p00200350 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.212 0.8740402552404465 64 AMTR_s00011p00092240 Cell cycle.organelle machineries.organelle fission.mitochondrion and peroxisome division.PMD division factor evm_27.TU.AmTr_v1.0_scaffold00011.24 0.873942385483773 65 AMTR_s00121p00103870 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00121.21 0.8735660589314833 66 AMTR_s00041p00082900 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00041.49 0.8730926294363995 68 AMTR_s00068p00090790 Cytoskeleton.microtubular network.alpha-beta-Tubulin heterodimer.alpha-Tubulin component evm_27.TU.AmTr_v1.0_scaffold00068.45 0.8719331339385945 69 AMTR_s00044p00093570 evm_27.TU.AmTr_v1.0_scaffold00044.65 0.8706471119539344 79 AMTR_s00101p00119280 Protein FLX-like 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.92 0.8699242578655474 71 AMTR_s00095p00019470 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.6 0.869345817046134 72 AMTR_s00047p00202290 evm_27.TU.AmTr_v1.0_scaffold00047.131 0.8693253270927238 73 AMTR_s00093p00105300 evm_27.TU.AmTr_v1.0_scaffold00093.33 0.8690022317266144 75 AMTR_s00055p00012250 Protein modification.phosphorylation.TKL kinase superfamily.LRR-XI kinase evm_27.TU.AmTr_v1.0_scaffold00055.1 0.8677886983429058 78 AMTR_s00039p00032460 External stimuli response.light.red/far red light.PIF transcriptional regulator evm_27.TU.AmTr_v1.0_scaffold00039.9 0.8677823162649511 79 AMTR_s00059p00146300 Protein degradation.peptidase families.metallopeptidase activities.Leishmanolysin-type protease evm_27.TU.AmTr_v1.0_scaffold00059.129 0.8669169292914369 82 AMTR_s00040p00181290 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase evm_27.TU.AmTr_v1.0_scaffold00040.173 0.8665349991868411 83 AMTR_s00022p00077030 Uncharacterized protein At1g76660 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.58 0.8658198724763866 84 AMTR_s00057p00199190 Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana 0.8654508977113108 85 AMTR_s00149p00054910 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00149.35 0.8653132106937722 86 AMTR_s00009p00233340 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.189 0.8632466113278136 88 AMTR_s00025p00100140 RNA biosynthesis.transcriptional activation.HUA2 transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.84 0.8627176241465125 89 AMTR_s00002p00090370 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.46 0.8617922713835747 94 AMTR_s00165p00040130 evm_27.TU.AmTr_v1.0_scaffold00165.22 0.8617389479416326 96 AMTR_s00059p00067090 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component evm_27.TU.AmTr_v1.0_scaffold00059.43 0.8616813157945187 97 AMTR_s00079p00038550 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase evm_27.TU.AmTr_v1.0_scaffold00079.11 0.8611486473142478 98 AMTR_s00066p00161070 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).snRNP40/U5-40kDa snRNP component evm_27.TU.AmTr_v1.0_scaffold00066.171 0.861019824168238 99