Sequence Description Alias PCC hrr AMTR_s00009p00256060 evm_27.TU.AmTr_v1.0_scaffold00009.284 0.9378651338535959 1 AMTR_s00039p00202100 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS5 component evm_27.TU.AmTr_v1.0_scaffold00039.167 0.9364640316469286 2 AMTR_s00004p00168920 Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.187 0.9245903415123058 3 AMTR_s00030p00182140 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00030.113 0.9205908338657818 4 AMTR_s00153p00079910 Solute transport.carrier-mediated transport.MC-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00153.44 0.9130411296784304 5 AMTR_s00007p00078630 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS18 component evm_27.TU.AmTr_v1.0_scaffold00007.43 0.9122980257983853 6 AMTR_s00025p00231520 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).cytoplasmic filaments.CG1 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00025.337 0.9100286658923523 18 AMTR_s00012p00142410 evm_27.TU.AmTr_v1.0_scaffold00012.81 0.9090806226960951 8 AMTR_s00060p00125310 GPN-loop GTPase QQT1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00060.64 0.9061738061990838 9 AMTR_s00002p00226510 evm_27.TU.AmTr_v1.0_scaffold00002.251 0.9056521070364043 10 AMTR_s00022p00202910 CDK5RAP3-like protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.238 0.9052834521199161 11 AMTR_s00146p00068870 UBP1-associated proteins 1C OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00146.41 0.904713441094299 12 AMTR_s00087p00135370 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3h component evm_27.TU.AmTr_v1.0_scaffold00087.43 0.9044014717435945 13 AMTR_s00109p00125300 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2 Met-tRNA binding factor complex.eIF2-alpha component evm_27.TU.AmTr_v1.0_scaffold00109.126 0.903976405445382 14 AMTR_s00012p00135630 Protein modification.phosphorylation.atypical kinase families.RIO kinase evm_27.TU.AmTr_v1.0_scaffold00012.69 0.9027873403326376 70 AMTR_s00078p00107740 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SSRP component evm_27.TU.AmTr_v1.0_scaffold00078.79 0.9027661313475301 16 AMTR_s00119p00130720 Protein degradation.26S proteasome.20S core protease.alpha-type subunits.alpha type-4 component evm_27.TU.AmTr_v1.0_scaffold00119.104 0.9026565476026904 17 AMTR_s00010p00221510 RNA processing.RNA modification.rRNA/tRNA methylation.TRM9-TRM112 tRNA uridine-methyltransferase complex.TRM9 component evm_27.TU.AmTr_v1.0_scaffold00010.238 0.9026315939863848 18 AMTR_s00088p00069780 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00088.41 0.9021107339876696 28 AMTR_s00058p00176500 Cytoskeleton.actin and tubulin folding.CCT chaperonin folding complex.CCT3 gamma subunit evm_27.TU.AmTr_v1.0_scaffold00058.166 0.9010709283425391 40 AMTR_s00039p00206760 RNA processing.ribonuclease activities.RNase P ribonuclease activities.RNA-dependent RNase P complex.RPP30/POP2 component evm_27.TU.AmTr_v1.0_scaffold00039.174 0.9006487992188459 21 AMTR_s00119p00121460 Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00119.95 0.8982958094094756 22 AMTR_s00023p00236700 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.middle module.MED4 component evm_27.TU.AmTr_v1.0_scaffold00023.196 0.897757777396708 23 AMTR_s00077p00102160 Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.85 0.8976253748724942 24 AMTR_s00002p00179800 Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.155 0.895982582942228 25 AMTR_s00064p00153650 evm_27.TU.AmTr_v1.0_scaffold00064.63 0.8955802886986269 26 AMTR_s00021p00235220 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.236 0.8954665424165803 27 AMTR_s00007p00199090 evm_27.TU.AmTr_v1.0_scaffold00007.172 0.8952119987240144 28 AMTR_s00101p00134540 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Imp4 assembly factor evm_27.TU.AmTr_v1.0_scaffold00101.112 0.8939031184685692 37 AMTR_s00018p00217640 RNA processing.RNA 5-end cap adding.mRNA capping enzyme evm_27.TU.AmTr_v1.0_scaffold00018.140 0.8934260732340368 30 AMTR_s00007p00254340 Solute transport.channels.OSCA calcium-permeable channel evm_27.TU.AmTr_v1.0_scaffold00007.296 0.893174870699705 31 AMTR_s00045p00178420 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS51/UNH component evm_27.TU.AmTr_v1.0_scaffold00045.216 0.8930464144681645 32 AMTR_s00088p00132770 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HPE1 splicing factor evm_27.TU.AmTr_v1.0_scaffold00088.99 0.8919653697117089 33 AMTR_s00001p00270140 Oligoribonuclease OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.458 0.890957950167902 34 AMTR_s00065p00054920 Proline iminopeptidase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.28 0.8907185580688427 35 AMTR_s00061p00067260 High mobility group B protein 15 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.42 0.8905756198312272 74 AMTR_s00010p00233620 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.RAE1 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00010.273 0.889771473461591 37 AMTR_s00061p00211510 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.OLI2 maturation factor evm_27.TU.AmTr_v1.0_scaffold00061.262 0.8891366059148137 38 AMTR_s00053p00089490 Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00053.44 0.8863424550940446 51 AMTR_s00071p00172900 evm_27.TU.AmTr_v1.0_scaffold00071.175 0.8851230718283837 40 AMTR_s00036p00184370 evm_27.TU.AmTr_v1.0_scaffold00036.95 0.8842384639238065 41 AMTR_s00057p00214920 evm_27.TU.AmTr_v1.0_scaffold00057.271 0.882572465943424 42 AMTR_s00021p00206430 evm_27.TU.AmTr_v1.0_scaffold00021.176 0.8817879242147741 43 AMTR_s00041p00194980 DNA damage response.BRCC DNA-damage response complex.BRCC45 component evm_27.TU.AmTr_v1.0_scaffold00041.172 0.8813422454214288 44 AMTR_s00059p00033770 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2A factor evm_27.TU.AmTr_v1.0_scaffold00059.16 0.8812775041503218 88 AMTR_s00022p00221050 Protein translocation.nucleus.nucleocytoplasmic transport.karyopherin beta transport receptors.XPO2 export karyopherin evm_27.TU.AmTr_v1.0_scaffold00022.277 0.8791395973292446 46 AMTR_s00003p00166290 Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.141 0.8780890203742924 47 AMTR_s00001p00247720 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.CTU1-CTU2 tRNA thiouridylase complex.CTU1 component evm_27.TU.AmTr_v1.0_scaffold00001.303 0.8779322517300892 48 AMTR_s00066p00018250 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3j component evm_27.TU.AmTr_v1.0_scaffold00066.1 0.877597873498195 49 AMTR_s00048p00227650 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component evm_27.TU.AmTr_v1.0_scaffold00048.220 0.8775331446116206 50 AMTR_s00024p00181670 E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00024.144 0.877258306226501 100 AMTR_s00009p00185150 Protein modification.ADP-ribosylation.poly(ADP-ribose) polymerase (PARP) evm_27.TU.AmTr_v1.0_scaffold00009.115 0.8770324285233326 53 AMTR_s00039p00011800 Protein PIR OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00039.1 0.8755187507740575 54 AMTR_s00009p00171900 Protein KINESIN LIGHT CHAIN-RELATED 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.101 0.8744510225491477 55 AMTR_s00067p00125830 evm_27.TU.AmTr_v1.0_scaffold00067.106 0.8738317572324837 56 AMTR_s00025p00115250 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS11 component evm_27.TU.AmTr_v1.0_scaffold00025.104 0.8734685740801098 81 AMTR_s00031p00154540 F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.69 0.8731413804309811 58 AMTR_s00093p00102680 Vesicle trafficking.endomembrane trafficking.protein recycling.Retromer protein recycling complex.VPS26c component evm_27.TU.AmTr_v1.0_scaffold00093.33 0.8730939068132146 59 AMTR_s00031p00119810 Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.52 0.8729758574146865 60 AMTR_s00010p00218390 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.PLP3 CCT-interacting tubulin folding cofactor evm_27.TU.AmTr_v1.0_scaffold00010.228 0.8728989850539929 61 AMTR_s00001p00272400 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.Tim50 component evm_27.TU.AmTr_v1.0_scaffold00001.524 0.8727434231699359 62 AMTR_s00106p00102120 Chaperone protein dnaJ 13 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.72 0.8725774155100079 63 AMTR_s00061p00213950 RNA processing.RNA modification.rRNA/tRNA methylation.TRM10 tRNA guanosine-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00061.266 0.8724881731200264 64 AMTR_s00049p00193100 Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).Augmin gamma-TuRC recruiting complex.AUG3 component evm_27.TU.AmTr_v1.0_scaffold00049.203 0.8720294766227636 65 AMTR_s00182p00050050 Protein degradation.peptidase families.serine-type peptidase activities.S28 serine carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00182.30 0.8717686627418302 66 AMTR_s00039p00015870 Cytoskeleton.microfilament network.actin polymerisation.SCAR/WAVE ARP2/3-activating complex.PIROGI component evm_27.TU.AmTr_v1.0_scaffold00039.2 0.8716900535026522 67 AMTR_s00007p00253380 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.GPN2/QQT1 nuclear import factor evm_27.TU.AmTr_v1.0_scaffold00007.293 0.8711453658109531 68 AMTR_s00067p00028100 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.Tim44 component evm_27.TU.AmTr_v1.0_scaffold00067.13 0.8707729891759547 70 AMTR_s00037p00206460 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00037.106 0.8702721277627522 76 AMTR_s00155p00078230 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.Rrp9/YAO1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00155.51 0.8702279889533294 72 AMTR_s00056p00059990 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.PWP2/UTP1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00056.40 0.8693559855335701 73 AMTR_s00061p00187310 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL7 component evm_27.TU.AmTr_v1.0_scaffold00061.212 0.867820929159071 75 AMTR_s00001p00257310 Serine/threonine-protein kinase/endoribonuclease IRE1b OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.349 0.8674253583505588 76 AMTR_s00131p00065190 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease evm_27.TU.AmTr_v1.0_scaffold00131.38 0.8667700649942209 79 AMTR_s00095p00027730 Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00095.8 0.8661183769554818 80 AMTR_s00061p00156200 Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL11 component evm_27.TU.AmTr_v1.0_scaffold00061.143 0.8661014216417185 81 AMTR_s00004p00077740 evm_27.TU.AmTr_v1.0_scaffold00004.60 0.8658867736078933 82 AMTR_s00003p00139120 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS2 rRNA removal.APUM24 rRNA processing factor evm_27.TU.AmTr_v1.0_scaffold00003.108 0.865859853644744 83 AMTR_s00202p00012570 Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC4 component evm_27.TU.AmTr_v1.0_scaffold00202.1 0.864804815135927 85 AMTR_s00038p00191060 Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.134 0.8646879675538797 86 AMTR_s00072p00173000 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.ENP1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00072.122 0.8645943526918738 87 AMTR_s00021p00243200 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A3 component evm_27.TU.AmTr_v1.0_scaffold00021.258 0.8645892295324537 88 AMTR_s00088p00121830 DNA damage response.DNA repair polymerase activities.DNA polymerase lambda evm_27.TU.AmTr_v1.0_scaffold00088.88 0.8642900645363351 90 AMTR_s00120p00109410 evm_27.TU.AmTr_v1.0_scaffold00120.50 0.863918916767642 91 AMTR_s00029p00164640 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.212 0.8638589480185023 92 AMTR_s00006p00083160 evm_27.TU.AmTr_v1.0_scaffold00006.30 0.8635313259820071 93 AMTR_s00126p00067580 Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP14 assembly factor evm_27.TU.AmTr_v1.0_scaffold00126.26 0.8634993936287098 94 AMTR_s00017p00231540 Protein BOBBER 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00017.184 0.8632182090300811 96 AMTR_s00066p00195180 evm_27.TU.AmTr_v1.0_scaffold00066.253 0.8630089422532448 97 AMTR_s00022p00062370 evm_27.TU.AmTr_v1.0_scaffold00022.41 0.8627609365106036 99 AMTR_s00036p00239350 evm_27.TU.AmTr_v1.0_scaffold00036.191 0.8624498069737273 100