Sequence Description Alias PCC hrr AMTR_s00138p00044110 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component evm_27.TU.AmTr_v1.0_scaffold00138.19 0.9526104251802204 3 AMTR_s00085p00089520 Chromatin organisation.chromatin remodeling complexes.SWR1 complex.PIE1 ATPase component evm_27.TU.AmTr_v1.0_scaffold00085.48 0.9491437384821457 2 AMTR_s00059p00171720 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00059.168 0.946343881993205 7 AMTR_s00065p00174980 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00065.145 0.9453895443984391 4 AMTR_s00006p00267510 Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.303 0.9419267861409003 5 AMTR_s00059p00074580 evm_27.TU.AmTr_v1.0_scaffold00059.49 0.933297058728633 6 AMTR_s00002p00079350 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component evm_27.TU.AmTr_v1.0_scaffold00002.39 0.9329153581942154 7 AMTR_s00044p00098420 Cell wall.callose.callose synthase evm_27.TU.AmTr_v1.0_scaffold00044.69 0.9268448782908496 59 AMTR_s00009p00253500 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.266 0.9264890501576695 41 AMTR_s00087p00144100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00087.47 0.9242260659406402 36 AMTR_s00060p00130340 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).inner ring.NUP155 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00060.71 0.9227390438421285 17 AMTR_s00061p00182640 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00061.204 0.9211396244288259 36 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9187846810715601 72 AMTR_s00147p00036340 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00147.15 0.9180056710317003 32 AMTR_s00068p00181410 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00068.139 0.9174313840647135 44 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component evm_27.TU.AmTr_v1.0_scaffold00046.46 0.916791461865075 50 AMTR_s00004p00143390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00004.140 0.9161613743217764 25 AMTR_s00029p00102340 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein evm_27.TU.AmTr_v1.0_scaffold00029.99 0.9159896955876212 18 AMTR_s00047p00125370 Protein degradation.peptidase families.cysteine-type peptidase activities.Phytocalpain calcium-activated protease evm_27.TU.AmTr_v1.0_scaffold00047.50 0.9159751330437538 48 AMTR_s00004p00092300 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component evm_27.TU.AmTr_v1.0_scaffold00004.75 0.9155753381354351 20 AMTR_s00020p00207770 evm_27.TU.AmTr_v1.0_scaffold00020.85 0.915531530522341 25 AMTR_s00043p00149000 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00043.28 0.9142486390015929 22 AMTR_s00035p00208530 Cytoskeleton.microtubular network.Kinesin microtubule-based motor protein activities.Kinesin-4 motor protein evm_27.TU.AmTr_v1.0_scaffold00035.44 0.9134875049328054 35 AMTR_s00041p00123630 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component evm_27.TU.AmTr_v1.0_scaffold00041.92 0.912658753095569 26 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9121238120477687 69 AMTR_s00032p00046150 evm_27.TU.AmTr_v1.0_scaffold00032.25 0.9116008142164288 63 AMTR_s00106p00090850 evm_27.TU.AmTr_v1.0_scaffold00106.59 0.91108315211859 28 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme evm_27.TU.AmTr_v1.0_scaffold00002.109 0.9088395174858611 71 AMTR_s00062p00213230 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana 0.9083030067115863 33 AMTR_s00123p00071440 O-fucosyltransferase 15 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00123.8 0.9070711750666993 75 AMTR_s00033p00150780 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.97 0.9062156537450665 64 AMTR_s00022p00245030 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 evm_27.TU.AmTr_v1.0_scaffold00022.362 0.9059953095379554 41 AMTR_s00029p00058110 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00029.52 0.9051570295175159 38 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase 0.904355088591329 39 AMTR_s00053p00190690 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00053.139 0.9034131265780764 56 AMTR_s00127p00108450 evm_27.TU.AmTr_v1.0_scaffold00127.27 0.9026502847206611 43 AMTR_s00049p00181100 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00049.175 0.9015498309189953 46 AMTR_s00029p00211750 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase evm_27.TU.AmTr_v1.0_scaffold00029.309 0.9014273304023612 56 AMTR_s00040p00226100 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00040.267 0.9012318755234796 76 AMTR_s00030p00120950 PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.69 0.9012110795950135 49 AMTR_s00040p00215000 DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1) evm_27.TU.AmTr_v1.0_scaffold00040.230 0.9001046779704944 53 AMTR_s00021p00149050 Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.105 0.8990525909135336 55 AMTR_s00086p00132870 evm_27.TU.AmTr_v1.0_scaffold00086.75 0.8987639132902968 56 AMTR_s00066p00084950 ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.66 0.8987334854699648 88 AMTR_s02193p00008230 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold02193.1 0.898497805249008 58 AMTR_s00164p00059220 Vesicle trafficking.endomembrane trafficking.vacuolar sorting.VSR vacuolar sorting receptor evm_27.TU.AmTr_v1.0_scaffold00164.25 0.8983600546631622 59 AMTR_s00047p00208850 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC1/TTN8 component evm_27.TU.AmTr_v1.0_scaffold00047.148 0.8969175847166012 75 AMTR_s00063p00197920 Rho GTPase-activating protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00063.78 0.8959965784646344 66 AMTR_s00018p00074980 RNA biosynthesis.transcriptional activation.NAC transcription factor evm_27.TU.AmTr_v1.0_scaffold00018.28 0.895753216542267 66 AMTR_s00021p00207790 evm_27.TU.AmTr_v1.0_scaffold00021.180 0.8957435959876587 67 AMTR_s00025p00184490 evm_27.TU.AmTr_v1.0_scaffold00025.223 0.8955085403604784 68 AMTR_s00022p00114710 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Brr2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00022.105 0.8951862954509733 70 AMTR_s00017p00244380 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class II/ASH1 histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00017.225 0.8949619895426142 71 AMTR_s00011p00222440 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.CCV accessory factors.AUL clathrin uncoating protein evm_27.TU.AmTr_v1.0_scaffold00011.98 0.8938992623829332 75 AMTR_s00088p00046280 Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00088.24 0.8929297374972677 80 AMTR_s00079p00078710 RNA biosynthesis.transcriptional activation.TAZ histone acetylase transcription factor evm_27.TU.AmTr_v1.0_scaffold00079.26 0.8927550336015858 82 AMTR_s00017p00130610 DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00017.53 0.8927403087411189 83 AMTR_s00048p00175550 evm_27.TU.AmTr_v1.0_scaffold00048.130 0.8925991070812453 85 AMTR_s00084p00089150 Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00084.24 0.8921841884903933 86 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00079.39 0.8921275098743042 87 AMTR_s00050p00189150 Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00050.51 0.8917548280861349 91 AMTR_s00092p00098010 evm_27.TU.AmTr_v1.0_scaffold00092.55 0.8916278047754818 93 AMTR_s00045p00173390 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00045.207 0.8915706157802636 96 AMTR_s00062p00102370 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP evm_27.TU.AmTr_v1.0_scaffold00062.75 0.8908650949440462 96