Sequence Description Alias PCC hrr AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9523403643911805 2 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.9426535927678912 5 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.941632860597294 3 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9414624607413933 8 AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9397008773556222 9 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9396495134820464 6 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.9373272098263519 7 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9368038405474947 8 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9362128469086616 9 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9357987563022814 22 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9356455159626895 12 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9337443265993298 17 AMTR_s00111p00138070 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00111.118 0.933199077394662 23 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9306085189652058 14 AMTR_s00032p00018130 Obg-like ATPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.3 0.9301785707831741 15 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9296758951573466 16 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9286741912072327 17 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.926654382064895 18 AMTR_s00153p00036670 Lipid metabolism.galactolipid and sulfolipid synthesis.plastidial UDP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00153.14 0.9259461604294096 19 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein evm_27.TU.AmTr_v1.0_scaffold00045.260 0.9256201960317387 20 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9245291636391509 21 AMTR_s00004p00143390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00004.140 0.9235971000054565 22 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9231896312641283 36 AMTR_s00033p00039610 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.16 0.9230035100955212 70 AMTR_s00069p00147710 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00069.114 0.9229113155299782 25 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.92281772809658 26 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9222615505296453 27 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.9217831580987381 28 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9214464487427068 29 AMTR_s00048p00073770 evm_27.TU.AmTr_v1.0_scaffold00048.33 0.921195404030107 51 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9210654328931239 31 AMTR_s00001p00255740 Coenzyme metabolism.tetrahydrofolate synthesis.dihydrofolate synthetase evm_27.TU.AmTr_v1.0_scaffold00001.339 0.9193573928996835 32 AMTR_s00082p00059940 Protein RST1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00082.4 0.9186382949833093 78 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.9184890447818328 34 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9183561972787065 35 AMTR_s00025p00142780 Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00025.155 0.9180120832733311 55 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9173754701505394 37 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9172569004635416 38 AMTR_s00033p00026050 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) evm_27.TU.AmTr_v1.0_scaffold00033.11 0.9165294068934379 39 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9152222396648133 40 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.9147063065957826 41 AMTR_s00182p00037730 Cell cycle.organelle machineries.organelle fission.plastid division.ARC6 FtsZ assembly regulator evm_27.TU.AmTr_v1.0_scaffold00182.17 0.9139871765310014 76 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.9133957295707771 44 AMTR_s00019p00219410 evm_27.TU.AmTr_v1.0_scaffold00019.273 0.9131391866712171 45 AMTR_s00106p00104330 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00106.74 0.9129846165340488 46 AMTR_s00092p00069380 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP5/TAC12 component evm_27.TU.AmTr_v1.0_scaffold00092.35 0.9129575058501241 80 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.912374186995025 52 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9122736564348221 49 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9120075450835377 50 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9107372842161703 52 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9105762028249512 53 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.9105425524849214 54 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9103123222331422 55 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9092212576163605 58 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.9088252204879014 59 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.272 0.908609859827804 60 AMTR_s00148p00069790 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VIII kinase families.RLCK-VIII-sis kinase evm_27.TU.AmTr_v1.0_scaffold00148.43 0.9078969282124927 61 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase evm_27.TU.AmTr_v1.0_scaffold00017.263 0.9077000432816582 62 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9072461921942531 87 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9068573403241805 67 AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9048058750113609 69 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.904577401289436 77 AMTR_s00062p00185880 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00062.184 0.9043279394114112 72 AMTR_s00001p00173820 Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.164 0.9041765742159198 73 AMTR_s00081p00136350 Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase evm_27.TU.AmTr_v1.0_scaffold00081.52 0.9039349589351247 74 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.903363822049516 75 AMTR_s00015p00199070 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL/KDM1 lysine-specific demethylase evm_27.TU.AmTr_v1.0_scaffold00015.53 0.9024785667345132 76 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.9023896454764878 77 AMTR_s00022p00251260 RNA processing.organelle machineries.RNA modification.tRNA thiolation.MnmA pathway.tRNA thiouridylase evm_27.TU.AmTr_v1.0_scaffold00022.388 0.9019738504652993 99 AMTR_s00003p00263110 Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana 0.9018734030949744 80 AMTR_s00067p00113950 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component evm_27.TU.AmTr_v1.0_scaffold00067.91 0.9017311376397208 81 AMTR_s00001p00080980 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase evm_27.TU.AmTr_v1.0_scaffold00001.55 0.9015647853628748 82 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.9011377915045261 84 AMTR_s00056p00071610 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.49 0.9009350089392122 87 AMTR_s00061p00182640 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00061.204 0.9001691634467435 93 AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.9000981683191673 89 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9000204622312572 90 AMTR_s00120p00041110 evm_27.TU.AmTr_v1.0_scaffold00120.11 0.899396312147506 93 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00065.7 0.8985382736493229 97 AMTR_s00224p00011500 Pentatricopeptide repeat-containing protein MRL1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00224.3 0.8983099582981898 98 AMTR_s00007p00031450 evm_27.TU.AmTr_v1.0_scaffold00007.11 0.8982737049433541 99 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8981018401750307 100