Sequence Description Alias PCC hrr AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.9588995845179473 1 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase evm_27.TU.AmTr_v1.0_scaffold00059.146 0.9469688225323106 2 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) evm_27.TU.AmTr_v1.0_scaffold00132.27 0.9448498903337411 3 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.9369086595694794 4 AMTR_s00071p00187330 Prolycopene isomerase, chloroplastic OS=Daucus carota evm_27.TU.AmTr_v1.0_scaffold00071.196 0.9240073107180501 7 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9229467467019485 18 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.919411351804175 11 AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase evm_27.TU.AmTr_v1.0_scaffold00101.37 0.9187438919044109 8 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00106.79 0.9180692427046698 20 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00117.48 0.9166514634424754 12 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.9139797950020505 11 AMTR_s00071p00117740 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.DnaK protein evm_27.TU.AmTr_v1.0_scaffold00071.92 0.9133695544107765 12 AMTR_s00022p00242310 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.351 0.9131663887734224 13 AMTR_s00035p00023210 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.regulatory pyruvate orthophosphate dikinase kinase evm_27.TU.AmTr_v1.0_scaffold00035.4 0.9100620311021036 14 AMTR_s00164p00068000 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00164.30 0.9095454299687172 15 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9088142934613899 30 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00016.120 0.906740475673889 17 AMTR_s00077p00122240 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00077.115 0.9067327893006091 18 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome evm_27.TU.AmTr_v1.0_scaffold00126.1 0.9067106556687006 19 AMTR_s00002p00212650 Enzyme classification.EC_1 oxidoreductases.EC_1.8 oxidoreductase acting on sulfur group of donor evm_27.TU.AmTr_v1.0_scaffold00002.223 0.905110336042061 20 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.9048658408615273 21 AMTR_s00048p00085290 Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris evm_27.TU.AmTr_v1.0_scaffold00048.41 0.903552081154016 22 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.9030282182513555 29 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8993206209590225 66 AMTR_s00001p00178450 Protein modification.disulfide bond formation.chloroplast.thiol-disulfide oxidoreductase (LTO1) evm_27.TU.AmTr_v1.0_scaffold00001.171 0.8992074312779273 25 AMTR_s00106p00071130 Senescence-associated protein OSA15, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00106.45 0.8987423101221015 26 AMTR_s00005p00168970 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.PWD phosphoglucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00005.53 0.8985815361292955 27 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.8971719861638562 37 AMTR_s00029p00159160 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.190 0.8940681717517293 29 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8927359297285884 49 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8926431997134243 31 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.8915890116409447 64 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8908198124084366 73 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase evm_27.TU.AmTr_v1.0_scaffold00055.158 0.8907867818776186 34 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.8902714851947757 76 AMTR_s00007p00141970 Bifunctional monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.93 0.8891482613931274 37 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component evm_27.TU.AmTr_v1.0_scaffold00012.92 0.8890837443765304 88 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.8881956684672989 41 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.8876845006903346 40 AMTR_s00140p00074640 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.pheophorbide a oxygenase (PAO) evm_27.TU.AmTr_v1.0_scaffold00140.32 0.8874292325121912 41 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.8872251365140178 100 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.8863001857917759 81 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.8860565885251975 94 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8859055288293165 46 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.8855124344790384 77 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.8848929435972117 47 AMTR_s00040p00111170 Protein ORANGE-GREEN, chloroplastic OS=Cucumis melo evm_27.TU.AmTr_v1.0_scaffold00040.80 0.8846719896700096 48 AMTR_s00123p00013920 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.uroporphyrinogen III synthase evm_27.TU.AmTr_v1.0_scaffold00123.1 0.8844576279174735 49 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase evm_27.TU.AmTr_v1.0_scaffold00074.38 0.8841834438993996 50 AMTR_s00007p00061550 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00007.32 0.8833675294069203 52 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00110.17 0.8832181988720461 53 AMTR_s00100p00127450 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00100.46 0.8828324094082304 54 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8822661690743605 81 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase evm_27.TU.AmTr_v1.0_scaffold00065.18 0.881245282714283 56 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8811988890601015 78 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase evm_27.TU.AmTr_v1.0_scaffold00175.30 0.8811398835833567 60 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8806254679876 60 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8797388264646059 73 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8791627515407875 68 AMTR_s00078p00065640 evm_27.TU.AmTr_v1.0_scaffold00078.39 0.8779618699320999 63 AMTR_s00006p00259220 Coenzyme metabolism.tetrapyrrol biosynthesis.uroporphyrinogen III formation.porphobilinogen synthase evm_27.TU.AmTr_v1.0_scaffold00006.214 0.8779334769633415 64 AMTR_s00109p00140320 Cellular respiration.glycolysis.methylglyoxal degradation.GLX1 lactoyl-glutathione lyase evm_27.TU.AmTr_v1.0_scaffold00109.150 0.8772373880604389 65 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.8740596098373663 99 AMTR_s00067p00206610 evm_27.TU.AmTr_v1.0_scaffold00067.230 0.8731113317209336 67 AMTR_s00058p00188880 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00058.187 0.8730561396185802 68 AMTR_s00107p00020160 Redox homeostasis.chloroplast redox homeostasis.NADPH-dependent thioredoxin reductase evm_27.TU.AmTr_v1.0_scaffold00107.3 0.8709101156661657 70 AMTR_s00078p00158650 evm_27.TU.AmTr_v1.0_scaffold00078.142 0.8706991275503978 71 AMTR_s00039p00224840 evm_27.TU.AmTr_v1.0_scaffold00039.204 0.8682951063035876 77 AMTR_s00033p00183310 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC17 component evm_27.TU.AmTr_v1.0_scaffold00033.135 0.8680135895548632 79 AMTR_s00008p00223050 Protein OBERON 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.141 0.8672261071492435 80 AMTR_s00019p00158670 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP5 protein evm_27.TU.AmTr_v1.0_scaffold00019.152 0.8649502768362752 83 AMTR_s00033p00159870 Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.105 0.8647561601147878 84 AMTR_s00107p00109770 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH mitochondrial protease complexes.FtsH4/11 component evm_27.TU.AmTr_v1.0_scaffold00107.33 0.8643039020906883 85 AMTR_s00177p00068130 evm_27.TU.AmTr_v1.0_scaffold00177.37 0.8627813527359772 89 AMTR_s00002p00249620 Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.348 0.8625637630999433 90 AMTR_s00029p00229910 evm_27.TU.AmTr_v1.0_scaffold00029.363 0.858796517629007 93 AMTR_s00024p00200150 YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.175 0.8570661092036789 95 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase evm_27.TU.AmTr_v1.0_scaffold00126.53 0.8568079246627761 96 AMTR_s00068p00127460 Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00068.87 0.8567274200904834 98 AMTR_s00011p00085990 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO-type) evm_27.TU.AmTr_v1.0_scaffold00011.20 0.8567268586491014 99 AMTR_s00097p00060630 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase evm_27.TU.AmTr_v1.0_scaffold00097.13 0.8566548110725729 100