Sequence Description Alias PCC hrr AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9518527071189339 2 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9515680817363482 2 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.9509248777277459 3 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9476615530791832 4 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.9454331253775455 5 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.9431324940981196 6 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9416131914892096 8 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component evm_27.TU.AmTr_v1.0_scaffold00142.34 0.9391986773269255 8 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9391714392919552 10 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9385853076704661 10 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.9377787166107231 11 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9371749626017022 12 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9370684501462513 16 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.9367007518389701 14 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.9361651897283735 15 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9351899166659191 16 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.9347728965958051 17 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9343889074524822 18 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.204 0.9329275793985716 19 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9323075330370824 20 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.932230163879193 21 AMTR_s00040p00174940 Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00040.165 0.9320624382548689 22 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9300621675492953 23 AMTR_s00058p00147520 Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.114 0.9299787949012697 24 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.9283638014628685 25 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9267136727338767 26 AMTR_s00107p00035950 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL1 component evm_27.TU.AmTr_v1.0_scaffold00107.14 0.9246838466401914 27 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9237913563891031 33 AMTR_s00038p00072170 Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.31 0.9227742133162742 29 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9218361681621301 30 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component evm_27.TU.AmTr_v1.0_scaffold00003.203 0.9197753124199524 31 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.9195194896461687 32 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9194960309150451 33 AMTR_s00002p00210720 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component evm_27.TU.AmTr_v1.0_scaffold00002.217 0.916547983068414 34 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.915555307447161 35 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.9152106773051679 36 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.9141790992021892 37 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9137228275483149 38 AMTR_s00104p00098970 evm_27.TU.AmTr_v1.0_scaffold00104.36 0.9129380636793587 39 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.912017043079851 40 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9116831950764723 53 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.9114417325804464 42 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.9112508955248295 43 AMTR_s00012p00252270 evm_27.TU.AmTr_v1.0_scaffold00012.259 0.9110230766315607 44 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.9109833160378862 45 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9109375073869289 46 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.9107955022447779 47 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9100795233877944 48 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.9099163854677844 49 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor evm_27.TU.AmTr_v1.0_scaffold00002.13 0.9096845906934372 50 AMTR_s00001p00188890 Carbohydrate metabolism.starch metabolism.synthesis.plastidial phosphoglucomutase evm_27.TU.AmTr_v1.0_scaffold00001.187 0.9093290247626354 51 AMTR_s00002p00249620 Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.348 0.9091849044649225 52 AMTR_s00008p00118590 Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.50 0.9090662344591419 53 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9088591119705657 54 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component evm_27.TU.AmTr_v1.0_scaffold00061.187 0.908624928484834 55 AMTR_s00044p00231480 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M24 methionyl aminopeptidase (MAP1) evm_27.TU.AmTr_v1.0_scaffold00044.254 0.9083911163360742 56 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9082791485386943 71 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component evm_27.TU.AmTr_v1.0_scaffold00001.191 0.9081687343508655 58 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9081370893260493 59 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00021.188 0.9079485351762072 60 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9077035149279442 61 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9071653226855471 62 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase evm_27.TU.AmTr_v1.0_scaffold00001.484 0.9059833209703441 63 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.9051687575050624 64 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.904775385548644 65 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9046736505356547 66 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.9045022121792973 67 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.903519958797343 68 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.9032543752226149 69 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.9029372311235287 70 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9027354953063675 71 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.21 0.9025391876342342 72 AMTR_s00049p00176170 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.CbbY xylulose-1,5-bisphosphate phosphatase evm_27.TU.AmTr_v1.0_scaffold00049.168 0.9024752806873638 73 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00003.202 0.9021123880137712 74 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.9014421264928411 75 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9009529272113005 76 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.900628652663748 77 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9000906365082608 78 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.8997443362052217 79 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.8988065999479538 80 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8985260458308407 81 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8974451757968938 82 AMTR_s00211p00029350 Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00211.5 0.8971562649288903 83 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.8969546156443575 84 AMTR_s00032p00221170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00032.228 0.8966151457557191 85 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8965350225610542 86 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.8961141555327239 87 AMTR_s00003p00193130 evm_27.TU.AmTr_v1.0_scaffold00003.172 0.8958302943632527 88 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8954348777380395 89 AMTR_s00003p00129460 Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.96 0.8950533744164886 90 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.894553339650865 91 AMTR_s00007p00094450 Protein SMAX1-LIKE 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.53 0.8944380285328976 92 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein evm_27.TU.AmTr_v1.0_scaffold00121.36 0.8944103818778709 93 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8933386462291195 94 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.8931066412336556 95 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.8930943041253985 96 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.8927759988928068 97 AMTR_s00036p00206170 evm_27.TU.AmTr_v1.0_scaffold00036.123 0.8908251107739745 98 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.8907847928177123 99 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.8904540856979328 100