Sequence Description Alias PCC hrr AMTR_s00101p00064110 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose synthase evm_27.TU.AmTr_v1.0_scaffold00101.37 0.9388667564240576 3 AMTR_s00059p00159100 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate reductase evm_27.TU.AmTr_v1.0_scaffold00059.146 0.937409801745622 4 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.9350672358523612 7 AMTR_s00021p00151130 evm_27.TU.AmTr_v1.0_scaffold00021.107 0.9342218865155311 4 AMTR_s00031p00115090 evm_27.TU.AmTr_v1.0_scaffold00031.51 0.9310091450010407 6 AMTR_s00006p00243670 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00006.123 0.9301892870030501 6 AMTR_s00175p00057810 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.4-hydroxy-3-methylbut-2-enyl diphosphate synthase evm_27.TU.AmTr_v1.0_scaffold00175.30 0.9284747961690923 7 AMTR_s00039p00053980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00039.21 0.9213779873159387 8 AMTR_s00048p00085290 Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris evm_27.TU.AmTr_v1.0_scaffold00048.41 0.9201810017230793 9 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9197216428928866 23 AMTR_s00048p00155800 Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.111 0.9173262230295507 11 AMTR_s00002p00233660 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.269 0.9166514634424754 12 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00040.184 0.9165912696855375 13 AMTR_s00019p00208640 Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.251 0.9147250328253764 14 AMTR_s00078p00161460 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00078.147 0.913773216795543 21 AMTR_s00085p00110520 evm_27.TU.AmTr_v1.0_scaffold00085.68 0.9136630042216473 16 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.9081277943965043 20 AMTR_s00003p00175410 Phosphoinositide phosphatase SAC1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.151 0.9080763673051315 18 AMTR_s00017p00253090 Protein modification.acetylation.sirtuin-type lysine deacetylase evm_27.TU.AmTr_v1.0_scaffold00017.263 0.9077958666796766 19 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.9075795202729998 36 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.9074543398032554 25 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.9066745007489398 22 AMTR_s00009p00220110 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M1 neutral/aromatic-hydroxyl amino acid aminopeptidase evm_27.TU.AmTr_v1.0_scaffold00009.158 0.9054233591603117 23 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00065.7 0.903268209048684 25 AMTR_s00029p00233910 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00029.376 0.9032460723237017 40 AMTR_s00001p00178450 Protein modification.disulfide bond formation.chloroplast.thiol-disulfide oxidoreductase (LTO1) evm_27.TU.AmTr_v1.0_scaffold00001.171 0.9016534661864308 26 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9015519151983769 46 AMTR_s00109p00097700 Malonate--CoA ligase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.85 0.9011721089424658 28 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9009176069347137 43 AMTR_s00002p00266310 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.glutathione reductase (GR) evm_27.TU.AmTr_v1.0_scaffold00002.507 0.8996548679663905 30 AMTR_s00077p00122240 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00077.115 0.8989332844443966 31 AMTR_s00040p00181990 Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00040.175 0.8986468333881156 32 AMTR_s00160p00077470 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.8974870427724132 33 AMTR_s00033p00159870 Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.105 0.8973172288632212 34 AMTR_s00024p00251490 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.341 0.8950270171325391 43 AMTR_s00024p00078360 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.38 0.8923974074338997 36 AMTR_s00126p00013900 Protein modification.peptide maturation.mitochondrion.PreP organellar peptidasome evm_27.TU.AmTr_v1.0_scaffold00126.1 0.8922241971722596 37 AMTR_s00005p00168970 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.PWD phosphoglucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00005.53 0.8921319028802109 38 AMTR_s00016p00252780 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana 0.8908359599243633 57 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.890017811706871 40 AMTR_s00033p00231560 Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond evm_27.TU.AmTr_v1.0_scaffold00033.227 0.8892532749898568 41 AMTR_s00064p00187430 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00064.82 0.8891531482593924 42 AMTR_s00132p00112670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.red chlorophyll catabolite reductase (RCCR) evm_27.TU.AmTr_v1.0_scaffold00132.27 0.8890173432775911 43 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.8885983449808754 44 AMTR_s00056p00043140 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CAF component evm_27.TU.AmTr_v1.0_scaffold00056.26 0.8885317992664404 45 AMTR_s00001p00048980 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00001.28 0.8881680475876405 46 AMTR_s00040p00202990 2-carboxy-D-arabinitol-1-phosphatase OS=Triticum aestivum evm_27.TU.AmTr_v1.0_scaffold00040.206 0.8876870852839597 98 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8868807197578346 86 AMTR_s00066p00167590 Thioredoxin-like fold domain-containing protein MRL7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.192 0.886390829352238 49 AMTR_s00011p00266100 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.228 0.8858259499738069 84 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8858023235643219 54 AMTR_s00083p00031040 Photosynthesis.photorespiration.aminotransferases.glutamate-glyoxylate transaminase evm_27.TU.AmTr_v1.0_scaffold00083.7 0.8846849271220478 53 AMTR_s00002p00190720 Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.170 0.884287033972878 55 AMTR_s00040p00111170 Protein ORANGE-GREEN, chloroplastic OS=Cucumis melo evm_27.TU.AmTr_v1.0_scaffold00040.80 0.8841930345548749 56 AMTR_s00071p00074520 PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.45 0.8841522888131902 57 AMTR_s00007p00247090 evm_27.TU.AmTr_v1.0_scaffold00007.270 0.8837487372411209 58 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.8836809788395182 59 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.8832321705434861 60 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.882514740102046 63 AMTR_s00045p00149950 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.161 0.8823295987204907 63 AMTR_s00010p00223650 Uncharacterized protein At4g37920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.245 0.8811247352433671 64 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.880710439147829 83 AMTR_s00329p00011770 Solute transport.carrier-mediated transport.MEX maltose transporter evm_27.TU.AmTr_v1.0_scaffold00329.2 0.880306907436469 66 AMTR_s00065p00031420 Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.13 0.8798500821972256 67 AMTR_s00035p00023210 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.regulatory pyruvate orthophosphate dikinase kinase evm_27.TU.AmTr_v1.0_scaffold00035.4 0.8798022892135007 68 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00002.387 0.8795391397954119 69 AMTR_s00069p00135030 Protein-ribulosamine 3-kinase, chloroplastic OS=Oryza sativa subsp. indica evm_27.TU.AmTr_v1.0_scaffold00069.99 0.8790878316714146 70 AMTR_s00065p00179810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00065.151 0.8776525866808157 71 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.8767701466611191 84 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8767528798758437 73 AMTR_s00101p00049040 evm_27.TU.AmTr_v1.0_scaffold00101.20 0.8766928245712977 74 AMTR_s00057p00042800 RNA biosynthesis.transcriptional activation.CAMTA transcription factor evm_27.TU.AmTr_v1.0_scaffold00057.23 0.8764123505813587 75 AMTR_s00078p00035540 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) evm_27.TU.AmTr_v1.0_scaffold00078.14 0.8760936418557317 76 AMTR_s00110p00042430 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00110.17 0.875708744827316 77 AMTR_s00061p00061380 Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.36 0.8756884929031453 78 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor evm_27.TU.AmTr_v1.0_scaffold00002.13 0.8748889545597137 79 AMTR_s00078p00073300 evm_27.TU.AmTr_v1.0_scaffold00078.44 0.8741016539251378 83 AMTR_s00130p00051210 evm_27.TU.AmTr_v1.0_scaffold00130.20 0.8739655585813075 84 AMTR_s00106p00063870 evm_27.TU.AmTr_v1.0_scaffold00106.40 0.87380378587848 94 AMTR_s00019p00027190 APO protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.6 0.8734851293929776 86 AMTR_s00055p00213550 Polyamine metabolism.spermidine/spermine.degradation.polyamine oxidase evm_27.TU.AmTr_v1.0_scaffold00055.158 0.8730653005944722 87 AMTR_s00074p00121610 Photosynthesis.photophosphorylation.chlororespiration.PTOX terminal oxidase evm_27.TU.AmTr_v1.0_scaffold00074.38 0.8728717073420268 88 AMTR_s00106p00071130 Senescence-associated protein OSA15, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00106.45 0.8718851985859495 91 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8718073621315008 92 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00069.157 0.8716039086040984 94 AMTR_s00068p00072270 Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00068.29 0.8715676508325034 95 AMTR_s00009p00251540 Solute transport.channels.VCCN chloride anion channel evm_27.TU.AmTr_v1.0_scaffold00009.260 0.871389101392026 96 AMTR_s00039p00132380 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00039.90 0.8709253026921261 97 AMTR_s00103p00143070 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.100 0.8708670373954773 99 AMTR_s00002p00234380 evm_27.TU.AmTr_v1.0_scaffold00002.271 0.8707631580407523 100