Sequence Description Alias PCC hrr AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.9500292112128365 2 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00065.7 0.9343499059640975 5 AMTR_s00004p00076010 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.59 0.9252857782718038 6 AMTR_s00159p00058480 Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00159.22 0.9215175936244479 37 AMTR_s00076p00181180 Protein PTST homolog 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00076.69 0.9180904366218263 32 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9179550884497416 24 AMTR_s00016p00242110 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.258 0.9143118689016433 16 AMTR_s00106p00043170 Leucine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.22 0.9110826892693181 23 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.9090567205372763 18 AMTR_s00036p00115830 RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor evm_27.TU.AmTr_v1.0_scaffold00036.48 0.9090328322052129 10 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.9086122366271469 30 AMTR_s00045p00149950 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.161 0.9081969854510143 16 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9081737598725907 35 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.9080808111194527 14 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.9073899873904934 15 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.9067428439014619 31 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00040.184 0.9065538220143521 17 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9057118111819625 24 AMTR_s00023p00221340 Multi-process regulation.circadian clock.PRR time-of-day-dependent expressed repressor evm_27.TU.AmTr_v1.0_scaffold00023.165 0.9050220475146306 19 AMTR_s00022p00098890 Solute transport.carrier-mediated transport.MC-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00022.82 0.9046137091813901 20 AMTR_s00004p00074570 evm_27.TU.AmTr_v1.0_scaffold00004.56 0.903664362648822 21 AMTR_s00022p00251260 RNA processing.organelle machineries.RNA modification.tRNA thiolation.MnmA pathway.tRNA thiouridylase evm_27.TU.AmTr_v1.0_scaffold00022.388 0.9029756818528458 93 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.9018548995669383 23 AMTR_s00060p00016430 Coenzyme metabolism.tetrapyrrol biosynthesis.heme synthesis and modification.ferrochelatase evm_27.TU.AmTr_v1.0_scaffold00060.3 0.9012025179897553 24 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase evm_27.TU.AmTr_v1.0_scaffold00167.23 0.8995382700600054 25 AMTR_s00112p00086310 evm_27.TU.AmTr_v1.0_scaffold00112.21 0.8993488463627136 67 AMTR_s00072p00102490 evm_27.TU.AmTr_v1.0_scaffold00072.49 0.8984013220583789 28 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8981148393775389 31 AMTR_s00029p00237180 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase evm_27.TU.AmTr_v1.0_scaffold00029.396 0.8978860464500328 83 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00002.387 0.8964057168686411 31 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.8963647082578505 34 AMTR_s00039p00132380 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00039.90 0.8959608439064881 33 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.8958814256126454 34 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8947999959579058 51 AMTR_s00001p00272880 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,2-alpha-fucosidase evm_27.TU.AmTr_v1.0_scaffold00001.572 0.8937192773763638 89 AMTR_s00085p00110520 evm_27.TU.AmTr_v1.0_scaffold00085.68 0.8921759606113069 37 AMTR_s00016p00242080 Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.257 0.8893899200179739 41 AMTR_s00006p00257020 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CIB transcriptional regulator evm_27.TU.AmTr_v1.0_scaffold00006.196 0.8890048348784035 40 AMTR_s00012p00252800 Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.262 0.888808712861727 41 AMTR_s00014p00133450 Bifunctional nuclease 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00014.49 0.8879601471366543 42 AMTR_s00019p00027190 APO protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.6 0.8876417593316825 43 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.887575336297252 99 AMTR_s00009p00261490 evm_27.TU.AmTr_v1.0_scaffold00009.333 0.8872135428903509 45 AMTR_s00014p00068600 Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00014.19 0.886129308542646 81 AMTR_s00340p00004320 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mCSF splicing factor evm_27.TU.AmTr_v1.0_scaffold00340.1 0.885710259838362 50 AMTR_s00010p00206450 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.monomeric acetyl-CoA carboxylase evm_27.TU.AmTr_v1.0_scaffold00010.198 0.8851972605043241 50 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.8843708909877108 90 AMTR_s00041p00140400 evm_27.TU.AmTr_v1.0_scaffold00041.99 0.882232746883337 74 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component evm_27.TU.AmTr_v1.0_scaffold00019.332 0.8820996836524246 64 AMTR_s00065p00024470 evm_27.TU.AmTr_v1.0_scaffold00065.8 0.8801846335576761 56 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.879862241250971 57 AMTR_s00043p00168880 BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00043.37 0.879632816334055 59 AMTR_s00078p00035540 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.ascorbate peroxidase (APX) evm_27.TU.AmTr_v1.0_scaffold00078.14 0.8787334046973402 60 AMTR_s00045p00048330 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.30 0.878145065336841 62 AMTR_s00021p00219530 evm_27.TU.AmTr_v1.0_scaffold00021.202 0.8773524802609096 64 AMTR_s00067p00176230 Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00067.180 0.8766042461533124 89 AMTR_s00016p00112930 Thioredoxin-like protein AAED1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.74 0.8762126625525084 68 AMTR_s00006p00263990 evm_27.TU.AmTr_v1.0_scaffold00006.263 0.8760247917501752 69 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.8755565330769218 71 AMTR_s00040p00143220 Protein degradation.peptidase families.metallopeptidase activities.aminopeptidase activities.M18 aspartyl aminopeptidase (DAP) evm_27.TU.AmTr_v1.0_scaffold00040.110 0.8755343217768294 72 AMTR_s00156p00067780 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00156.36 0.8755114479829315 73 AMTR_s00144p00074180 evm_27.TU.AmTr_v1.0_scaffold00144.37 0.8751544292669563 74 AMTR_s00022p00098570 Solute transport.carrier-mediated transport.MC-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00022.81 0.8749490372777032 75 AMTR_s00019p00039970 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.19 0.8742867637338483 77 AMTR_s00066p00064040 Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.41 0.8742063478777186 78 AMTR_s00024p00078360 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.38 0.8741922573610567 79 AMTR_s00020p00108940 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease evm_27.TU.AmTr_v1.0_scaffold00020.39 0.8729677099897445 81 AMTR_s00066p00040550 Probable methyltransferase PMT18 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00066.17 0.8720377401434125 85 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component evm_27.TU.AmTr_v1.0_scaffold00029.331 0.871963136966194 98 AMTR_s00117p00114400 Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00117.48 0.8716039086040984 94 AMTR_s00056p00131980 Phytohormones.cytokinin.perception and signal transduction.AHP-type signal transducer evm_27.TU.AmTr_v1.0_scaffold00056.100 0.8707640355114623 90 AMTR_s00032p00234570 Protein SMG7L OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.265 0.8706470064687298 91 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00203.3 0.8694529814212388 95 AMTR_s00103p00070570 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor evm_27.TU.AmTr_v1.0_scaffold00103.36 0.8694059995072012 98 AMTR_s00109p00098140 Lipid metabolism.fatty acid synthesis.mitochondrial Type II fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) evm_27.TU.AmTr_v1.0_scaffold00109.86 0.8691330084038583 98