Sequence Description Alias PCC hrr AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.952028661495498 1 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9398799995972715 3 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00110.101 0.9358392400152323 3 AMTR_s00044p00116170 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00044.90 0.9312626432481151 4 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9306125061289573 16 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.9283286022235846 9 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.9271676906073477 7 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9243412035186429 19 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9241830863440227 29 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.9221868588964248 10 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.9201970961683668 11 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9198537284987086 23 AMTR_s00045p00200960 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA1 protein evm_27.TU.AmTr_v1.0_scaffold00045.260 0.9175038464210435 13 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9174245123230632 15 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9152703580246914 15 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.912472343212187 51 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9113873448365438 45 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9111311943486526 35 AMTR_s00075p00091010 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00075.28 0.9102473337502013 20 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9101101681942738 68 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9092011182761006 50 AMTR_s00009p00072720 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.21 0.907997696345793 33 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9078844375134725 25 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9071231842343963 24 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.9068619342913503 25 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9067737850280045 71 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9055081815453065 60 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.160 0.9049214378682856 28 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9047414867867993 34 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.9042533711757744 30 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.9038736428925471 34 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9029652276625445 46 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component evm_27.TU.AmTr_v1.0_scaffold00028.110 0.901576174424215 33 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.9011349745057466 40 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.8998382666615462 54 AMTR_s00090p00120760 RNA processing.ribonuclease activities.RNase Z endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00090.59 0.899654270625201 36 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase evm_27.TU.AmTr_v1.0_scaffold00117.15 0.8995630711202313 37 AMTR_s00029p00083110 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF136 protein evm_27.TU.AmTr_v1.0_scaffold00029.76 0.8995404307176619 38 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8989221610779561 68 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8979560120508219 43 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8978985444164406 55 AMTR_s00010p00055110 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psPSRP3 component evm_27.TU.AmTr_v1.0_scaffold00010.27 0.8969766442224463 42 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.8959413498246007 56 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.8954503816049817 76 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8954463064577802 45 AMTR_s00165p00016900 evm_27.TU.AmTr_v1.0_scaffold00165.3 0.8951897933336783 46 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.8943796738225845 84 AMTR_s00120p00092320 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00120.41 0.8942126635253805 48 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8928384653237047 49 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.8926037262317335 66 AMTR_s00216p00022320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphtoate-phytyltransferase evm_27.TU.AmTr_v1.0_scaffold00216.3 0.8918902415179847 51 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8914675650995119 52 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8908814757734188 71 AMTR_s00182p00029890 Cell cycle.organelle machineries.organelle fission.plastid division.GC1/SulA regulator protein evm_27.TU.AmTr_v1.0_scaffold00182.12 0.8904121915158513 54 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.8900695483510843 70 AMTR_s00062p00057610 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL6 component evm_27.TU.AmTr_v1.0_scaffold00062.31 0.8898444547569039 57 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8896132157197967 75 AMTR_s00007p00219480 Coenzyme metabolism.tetrapyrrol biosynthesis.protoporphyrin IX formation.uroporphyrinogen III decarboxylase evm_27.TU.AmTr_v1.0_scaffold00007.207 0.8895777951917532 82 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.8883419405388758 60 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8882969180838142 61 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.8877873700510789 62 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.8876412632370783 86 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00058.152 0.8875794103029546 64 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.8875267773058614 65 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.8874149979486535 78 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8871522140511756 67 AMTR_s00008p00202090 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00008.120 0.8869591034266848 68 AMTR_s00058p00109040 evm_27.TU.AmTr_v1.0_scaffold00058.63 0.8861353732732012 69 AMTR_s00050p00111180 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.SEX4-type phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00050.23 0.8852211854757245 70 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.8849644032279792 71 AMTR_s00021p00196260 evm_27.TU.AmTr_v1.0_scaffold00021.159 0.8838154777889483 73 AMTR_s00046p00014960 Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.2 0.8836716991699471 75 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.8833458129683437 81 AMTR_s00012p00077460 Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum evm_27.TU.AmTr_v1.0_scaffold00012.34 0.8830417543008061 75 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8825971703898392 76 AMTR_s00013p00209880 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL18 component evm_27.TU.AmTr_v1.0_scaffold00013.145 0.8825550026874064 77 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.8825376367752497 97 AMTR_s00133p00054340 PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00133.19 0.8823650030421116 79 AMTR_s00029p00193710 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.261 0.8817592956474417 81 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.8815588454395786 82 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8805756843987448 86 AMTR_s00003p00212290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS1 component evm_27.TU.AmTr_v1.0_scaffold00003.203 0.8805222022713567 88 AMTR_s00025p00170170 Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.202 0.8798466876819181 85 AMTR_s00009p00260200 evm_27.TU.AmTr_v1.0_scaffold00009.319 0.8797826805331064 86 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8796679764261736 88 AMTR_s00050p00032750 evm_27.TU.AmTr_v1.0_scaffold00050.4 0.8795035648652849 89 AMTR_s00074p00190580 Protein modification.protein folding and quality control.protein folding catalyst activities.TF nascent polypeptide chaperone evm_27.TU.AmTr_v1.0_scaffold00074.113 0.8792614706303942 90 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.8790619560410295 91 AMTR_s00021p00119000 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL34 component evm_27.TU.AmTr_v1.0_scaffold00021.66 0.878893397645594 92 AMTR_s00071p00184210 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.189 0.8777894511422034 93 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase evm_27.TU.AmTr_v1.0_scaffold00001.484 0.8771103287881612 95 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.8766643217481285 96 AMTR_s00011p00203340 GTPase ERA-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.71 0.8760278110792244 98