Sequence Description Alias PCC hrr AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9548528113142971 3 AMTR_s00069p00176780 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00069.157 0.9500292112128365 2 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9384070441087534 3 AMTR_s00106p00043170 Leucine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.22 0.9379155585158331 8 AMTR_s00058p00193720 Protein modification.dephosphorylation.tyrosine protein phosphatase (PTP) superfamily.dual-specificity phosphatase families.LSF phosphoglucan phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.193 0.9336850302995897 5 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.9281598203176237 15 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9249194777927052 12 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9244531653367882 32 AMTR_s00112p00086310 evm_27.TU.AmTr_v1.0_scaffold00112.21 0.9244469059746112 9 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.9231750640875642 12 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.9193519583806741 11 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.9160091476602401 12 AMTR_s00110p00094310 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00110.55 0.915094782697474 18 AMTR_s00022p00251260 RNA processing.organelle machineries.RNA modification.tRNA thiolation.MnmA pathway.tRNA thiouridylase evm_27.TU.AmTr_v1.0_scaffold00022.388 0.9145083595869488 51 AMTR_s00041p00140400 evm_27.TU.AmTr_v1.0_scaffold00041.99 0.914281615667495 15 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.9141850496554278 16 AMTR_s00111p00138070 Protein biosynthesis.aminoacyl-tRNA synthetase activities.glycine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00111.118 0.9141753099618131 70 AMTR_s00043p00168880 BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00043.37 0.9140582866096872 18 AMTR_s00004p00076010 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.59 0.9138890669702979 19 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9138786474560573 20 AMTR_s00340p00004320 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.mCSF splicing factor evm_27.TU.AmTr_v1.0_scaffold00340.1 0.9126622654843873 21 AMTR_s00159p00058480 Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00159.22 0.912179257428155 64 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9119450179229401 32 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9111029603206056 24 AMTR_s00010p00206450 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.monomeric acetyl-CoA carboxylase evm_27.TU.AmTr_v1.0_scaffold00010.198 0.9102651746706164 25 AMTR_s00038p00141420 Carbohydrate metabolism.starch metabolism.degradation.maltose metabolism.cytosolic glucanotransferase evm_27.TU.AmTr_v1.0_scaffold00038.86 0.9102174993783454 26 AMTR_s00072p00102490 evm_27.TU.AmTr_v1.0_scaffold00072.49 0.9092192969827229 27 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9080617073317122 38 AMTR_s00016p00242110 ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.258 0.9063598201357111 29 AMTR_s00009p00261490 evm_27.TU.AmTr_v1.0_scaffold00009.333 0.9060206841296723 30 AMTR_s00101p00054450 evm_27.TU.AmTr_v1.0_scaffold00101.26 0.9059428194486303 31 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.9055744253360436 32 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.9050535188030224 33 AMTR_s00081p00136350 Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase evm_27.TU.AmTr_v1.0_scaffold00081.52 0.9045933418599108 44 AMTR_s00002p00254720 Solute transport.channels.CorA family.MRS/MGT metal cation transporter evm_27.TU.AmTr_v1.0_scaffold00002.387 0.9042427270336263 35 AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9041402663128029 36 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.9037818307534249 37 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9035578593970847 68 AMTR_s00103p00070570 Protein biosynthesis.organelle translation machineries.translation termination.RRF ribosome recycling factor evm_27.TU.AmTr_v1.0_scaffold00103.36 0.9029428143062128 39 AMTR_s00022p00127120 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.118 0.9029004631474106 40 AMTR_s00049p00169350 Protein STICHEL-like 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.158 0.9020416956979412 41 AMTR_s00062p00145630 CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00062.132 0.9017709479819799 51 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00058.152 0.9016731791416738 43 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9003733101486215 67 AMTR_s00019p00236430 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.NFU1/2/3 component evm_27.TU.AmTr_v1.0_scaffold00019.332 0.9002942998084352 46 AMTR_s00077p00168500 evm_27.TU.AmTr_v1.0_scaffold00077.183 0.9001142973102222 47 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9000981683191673 89 AMTR_s00045p00149950 DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00045.161 0.9000944134512517 49 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.8996719464435105 50 AMTR_s00009p00259240 evm_27.TU.AmTr_v1.0_scaffold00009.307 0.8993536719969365 51 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8989184381191606 52 AMTR_s00029p00237180 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase evm_27.TU.AmTr_v1.0_scaffold00029.396 0.8973466095323509 87 AMTR_s00029p00242750 Protein root UVB sensitive 5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.424 0.8970802567448676 54 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.8954094836076868 56 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.8952533629189591 60 AMTR_s00025p00217750 Chloroplast envelope membrane protein OS=Chlorokybus atmophyticus evm_27.TU.AmTr_v1.0_scaffold00025.298 0.8951928464865901 59 AMTR_s00040p00188540 Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme evm_27.TU.AmTr_v1.0_scaffold00040.184 0.8942622875468973 60 AMTR_s00065p00022170 RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP) evm_27.TU.AmTr_v1.0_scaffold00065.7 0.893404443977622 62 AMTR_s00036p00115830 RNA biosynthesis.transcriptional activation.HSF (heat shock) transcription factor evm_27.TU.AmTr_v1.0_scaffold00036.48 0.8917264403080856 64 AMTR_s00008p00195760 evm_27.TU.AmTr_v1.0_scaffold00008.113 0.8916198306277224 65 AMTR_s00029p00206560 Uncharacterized protein At2g39920 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.297 0.8912762193770098 66 AMTR_s00001p00272880 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,2-alpha-fucosidase evm_27.TU.AmTr_v1.0_scaffold00001.572 0.8900125494899966 98 AMTR_s00078p00105470 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00078.76 0.8897858143249346 68 AMTR_s00001p00173820 Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.164 0.8896820382850269 69 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00085.65 0.88953654278555 70 AMTR_s00101p00054740 evm_27.TU.AmTr_v1.0_scaffold00101.27 0.8880919372130082 72 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.8880854892416582 73 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.887750941409698 74 AMTR_s00058p00186720 Protein KINESIN LIGHT CHAIN-RELATED 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00058.182 0.887368913354791 75 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.8868101756287416 86 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.8866983484979408 91 AMTR_s00022p00098570 Solute transport.carrier-mediated transport.MC-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00022.81 0.8864336816393642 80 AMTR_s00167p00056240 Lipid metabolism.lipid degradation.triacylglycerol lipase activities.diacyl-/triacylglycerol lipase activities.LIP-type lipase evm_27.TU.AmTr_v1.0_scaffold00167.23 0.8864153734666701 81 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00021.188 0.8861009818968965 82 AMTR_s00023p00241180 evm_27.TU.AmTr_v1.0_scaffold00023.207 0.8859141311891239 83 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8856496857520049 84 AMTR_s00099p00089660 evm_27.TU.AmTr_v1.0_scaffold00099.67 0.8854074016261427 86 AMTR_s00059p00198400 Protein modification.phosphorylation.TKL kinase superfamily.PERK-related kinase evm_27.TU.AmTr_v1.0_scaffold00059.220 0.8851926116186378 87 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8850402054389513 88 AMTR_s00048p00030920 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00048.6 0.8849660380845192 89 AMTR_s00016p00112930 Thioredoxin-like protein AAED1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.74 0.8849540732362678 90 AMTR_s00001p00018090 Phosphoinositide phosphatase SAC6 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.5 0.8838272986227722 92 AMTR_s00089p00029710 Sialyltransferase-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00089.8 0.8831134820750337 93 AMTR_s00117p00058770 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.VDE violaxanthin de-epoxidase evm_27.TU.AmTr_v1.0_scaffold00117.15 0.8830366459933949 94 AMTR_s00203p00014010 Disease resistance protein RFL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00203.3 0.8828073078524157 96 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.204 0.8825179849755886 97 AMTR_s00044p00085200 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.57 0.8821260275090286 98 AMTR_s00004p00074570 evm_27.TU.AmTr_v1.0_scaffold00004.56 0.8817967183973516 100