Sequence Description Alias PCC hrr AMTR_s00077p00134480 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00077.129 0.9577133616282445 2 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.9554099357646482 2 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9459712720243793 7 AMTR_s00020p00012640 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00020.3 0.9361651897283735 15 AMTR_s00059p00156080 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcsB component evm_27.TU.AmTr_v1.0_scaffold00059.142 0.9340297477760453 13 AMTR_s00002p00029100 Cytoskeleton.cp-actin-dependent plastid movement.KAC accessory motility factor evm_27.TU.AmTr_v1.0_scaffold00002.13 0.93245716675739 6 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.927552072719392 20 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.9275390879114624 15 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.9259733173786961 15 AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9249648800630567 17 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.9231049174238409 11 AMTR_s00032p00205750 evm_27.TU.AmTr_v1.0_scaffold00032.196 0.9230908133919857 12 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9229809370863541 30 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.9218555930389662 14 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9194030423428131 33 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.9162992477923086 19 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9157106127782523 17 AMTR_s00001p00203320 D-ribulose kinase OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.204 0.9157021320407734 18 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein evm_27.TU.AmTr_v1.0_scaffold00121.36 0.9139332749548948 19 AMTR_s00044p00143330 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.LPA3 protein evm_27.TU.AmTr_v1.0_scaffold00044.141 0.9127692739964174 31 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9124109989002214 36 AMTR_s00045p00205250 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00045.272 0.9116004322685383 34 AMTR_s00016p00219550 evm_27.TU.AmTr_v1.0_scaffold00016.199 0.9114725810283382 23 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9092320706523322 24 AMTR_s00041p00009900 evm_27.TU.AmTr_v1.0_scaffold00041.2 0.9091537534347595 31 AMTR_s00023p00186390 External stimuli response.light.UV-A/blue light.phototropin-mediated photoperception.phototropin photoreceptor evm_27.TU.AmTr_v1.0_scaffold00023.124 0.9090156320224786 26 AMTR_s00085p00105120 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.GWD glucan, water dikinase evm_27.TU.AmTr_v1.0_scaffold00085.65 0.9077136738448794 27 AMTR_s00029p00219050 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH7/9 component evm_27.TU.AmTr_v1.0_scaffold00029.331 0.9073611314520579 28 AMTR_s00103p00115980 Protein TAB2 homolog, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00103.69 0.9061813848491203 29 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9057966792566079 30 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.9055333889987037 31 AMTR_s00049p00169350 Protein STICHEL-like 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.158 0.9053722163078293 32 AMTR_s00021p00213260 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00021.188 0.9034913420208331 33 AMTR_s00025p00214840 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.290 0.9030598241573419 34 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9030053587494157 36 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.9009494994468531 36 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.9007141441059507 37 AMTR_s00065p00038950 evm_27.TU.AmTr_v1.0_scaffold00065.17 0.8999260774527266 44 AMTR_s00047p00095590 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00047.38 0.8989184381191606 52 AMTR_s00032p00233500 Protein modification.phosphorylation.CMGC kinase superfamily.CLK/LAMMER kinase evm_27.TU.AmTr_v1.0_scaffold00032.261 0.8986970658105098 40 AMTR_s00010p00141760 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.dehydroascorbate reductase (DHAR) evm_27.TU.AmTr_v1.0_scaffold00010.104 0.8980882537321462 41 AMTR_s00066p00198600 Photosynthesis.photophosphorylation.photosystem I.assembly and maintenance.VIPP protein evm_27.TU.AmTr_v1.0_scaffold00066.264 0.8971680600805326 54 AMTR_s00077p00042300 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00077.24 0.8965136294402609 44 AMTR_s00007p00156370 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll synthase ChlG evm_27.TU.AmTr_v1.0_scaffold00007.117 0.8954463064577802 45 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.8947799811604915 65 AMTR_s00045p00217350 evm_27.TU.AmTr_v1.0_scaffold00045.306 0.8945076544280306 53 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.8942521621174689 48 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.8939445846102787 63 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.8937928644564666 100 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8932765000933354 52 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.8924733790490835 53 AMTR_s00030p00041970 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00030.14 0.8917669365824153 75 AMTR_s00007p00267580 RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor evm_27.TU.AmTr_v1.0_scaffold00007.382 0.8917169073993163 56 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8916205096733292 90 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.8915619717235025 75 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8913001354475786 60 AMTR_s00024p00130820 evm_27.TU.AmTr_v1.0_scaffold00024.77 0.8912951300899972 60 AMTR_s00112p00137130 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (SGB/GlcT-type) evm_27.TU.AmTr_v1.0_scaffold00112.35 0.8895558774887574 62 AMTR_s00061p00050140 evm_27.TU.AmTr_v1.0_scaffold00061.26 0.8893387859263281 63 AMTR_s00046p00214930 Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.141 0.8891268133372597 65 AMTR_s00109p00032070 evm_27.TU.AmTr_v1.0_scaffold00109.19 0.8890485845176794 66 AMTR_s00142p00090900 evm_27.TU.AmTr_v1.0_scaffold00142.59 0.8873286066885184 90 AMTR_s00001p00271310 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.xanthophyll synthesis.carotenoid epsilon ring hydroxylase evm_27.TU.AmTr_v1.0_scaffold00001.484 0.8863706469279676 68 AMTR_s00069p00137820 evm_27.TU.AmTr_v1.0_scaffold00069.102 0.8863262664354782 69 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8857869503890996 89 AMTR_s00025p00127130 evm_27.TU.AmTr_v1.0_scaffold00025.119 0.8854623983844858 71 AMTR_s00007p00239300 Receptor-like protein 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.251 0.8853346584544848 72 AMTR_s00070p00046580 Chaperone protein dnaJ A7A, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00070.20 0.8850494013091098 73 AMTR_s00029p00225980 Solute transport.carrier-mediated transport.MFS superfamily.PHT4 phosphate transporter evm_27.TU.AmTr_v1.0_scaffold00029.352 0.8848640864048043 74 AMTR_s00039p00096400 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.7-hydroxymethyl chlorophyll(ide) a reductase evm_27.TU.AmTr_v1.0_scaffold00039.54 0.8843897438135029 75 AMTR_s00024p00220620 Protein translocation.peroxisome.importomer translocation system.receptor polyubiquitination system.Pex10 component evm_27.TU.AmTr_v1.0_scaffold00024.216 0.8830469465350899 76 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.8824059584401435 83 AMTR_s00061p00120110 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00061.96 0.8823184833721948 79 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8819249580975059 81 AMTR_s00058p00167600 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00058.152 0.8812266213957887 82 AMTR_s00142p00060790 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.transfer phase.HCF101 component evm_27.TU.AmTr_v1.0_scaffold00142.34 0.8795619410041494 97 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8775997569496443 85 AMTR_s00158p00073760 Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris evm_27.TU.AmTr_v1.0_scaffold00158.16 0.8771078458635297 86 AMTR_s00044p00085200 Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00044.57 0.8755599040073901 88 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.8750609512429973 90 AMTR_s00025p00248060 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.401 0.8748847541276552 91 AMTR_s00216p00022320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphtoate-phytyltransferase evm_27.TU.AmTr_v1.0_scaffold00216.3 0.8746256158875118 92 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.873773471238268 95 AMTR_s00110p00125590 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase evm_27.TU.AmTr_v1.0_scaffold00110.101 0.8731026617016113 97 AMTR_s00202p00037600 evm_27.TU.AmTr_v1.0_scaffold00202.15 0.8730641756576657 98