Sequence Description Alias PCC hrr AMTR_s00096p00107320 Coenzyme metabolism.phylloquinone synthesis.1,4-dihydroxy-2-naphthoyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00096.66 0.9557341721727185 1 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9518461713228632 7 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9495750178658569 3 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9464349285292893 4 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9463404511003126 5 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.9457208276505918 6 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9436248976327406 7 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.943135181001582 8 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9397008773556222 9 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9370829880369252 11 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9356561644329091 11 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9351835495645555 12 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.9346237392088064 13 AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9330673462190676 15 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9315291825387673 15 AMTR_s00022p00244130 Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.358 0.9314629408904991 39 AMTR_s00048p00073770 evm_27.TU.AmTr_v1.0_scaffold00048.33 0.9308407147878498 28 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.92959625208609 18 AMTR_s00077p00182530 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.207 0.92917742181689 19 AMTR_s00106p00098180 evm_27.TU.AmTr_v1.0_scaffold00106.68 0.9288012222782749 51 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9285240897577801 21 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.9284667810244267 22 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.9279997788372518 23 AMTR_s00002p00145340 Cellular respiration.tricarboxylic acid cycle.mitochondrial NAD-dependent malic enzyme evm_27.TU.AmTr_v1.0_scaffold00002.109 0.9272050599065379 24 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9267665103180355 25 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9249658160942686 26 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.924826217464365 27 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9242744420240776 28 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.923111846360651 29 AMTR_s00068p00029180 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.ZDS zeta-carotene desaturase evm_27.TU.AmTr_v1.0_scaffold00068.6 0.9227507155279947 30 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9227224941610622 31 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9225335660978526 32 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9223394405276556 33 AMTR_s00025p00142780 Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00025.155 0.9222890775052742 41 AMTR_s00071p00072250 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.42 0.9215899620354756 35 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.9215475438399399 36 AMTR_s00110p00044140 Heparanase-like protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.18 0.9199975156813828 37 AMTR_s00009p00236210 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP11/MURE component evm_27.TU.AmTr_v1.0_scaffold00009.196 0.9192627818296286 38 AMTR_s00024p00154360 Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00024.110 0.9188761629624924 39 AMTR_s00182p00037730 Cell cycle.organelle machineries.organelle fission.plastid division.ARC6 FtsZ assembly regulator evm_27.TU.AmTr_v1.0_scaffold00182.17 0.9186654664224723 52 AMTR_s00068p00160530 evm_27.TU.AmTr_v1.0_scaffold00068.112 0.9180224883418349 62 AMTR_s00053p00158610 Coenzyme metabolism.tetrahydrofolate synthesis.folyl-polyglutamate synthetase evm_27.TU.AmTr_v1.0_scaffold00053.107 0.9179238931345028 42 AMTR_s00028p00237040 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.124 0.917917096570855 46 AMTR_s00022p00070510 Protein modification.peptide maturation.plastid.SPP stromal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00022.51 0.9160746554081198 44 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9159874197643321 51 AMTR_s00045p00114550 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00045.110 0.9157503978458165 46 AMTR_s00114p00128980 evm_27.TU.AmTr_v1.0_scaffold00114.59 0.9157350242167583 47 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.9149329614107102 48 AMTR_s00009p00260060 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) evm_27.TU.AmTr_v1.0_scaffold00009.318 0.9145500161218291 49 AMTR_s00014p00128310 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase evm_27.TU.AmTr_v1.0_scaffold00014.46 0.9145024479344019 50 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.9133845639186242 51 AMTR_s00034p00235670 Cell cycle.organelle machineries.DNA replication.DNA gyrase complex.subunit B evm_27.TU.AmTr_v1.0_scaffold00034.119 0.9130220869455213 52 AMTR_s00131p00054800 evm_27.TU.AmTr_v1.0_scaffold00131.33 0.9129491717243426 53 AMTR_s00010p00237980 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00010.293 0.9126654967774656 60 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component evm_27.TU.AmTr_v1.0_scaffold00007.52 0.9125276276096111 80 AMTR_s00077p00140050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.NFS2 cysteine desulfurase component evm_27.TU.AmTr_v1.0_scaffold00077.138 0.9122532795941507 56 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.911526401420672 57 AMTR_s00013p00056780 evm_27.TU.AmTr_v1.0_scaffold00013.20 0.9107140526082961 91 AMTR_s00122p00097060 Solute transport.carrier-mediated transport.BART superfamily.BASS family.BAT 2-keto acid transporter evm_27.TU.AmTr_v1.0_scaffold00122.40 0.9097951029418139 61 AMTR_s00077p00156540 Serotonin N-acetyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.160 0.9093653020534972 63 AMTR_s00033p00216940 Solute transport.carrier-mediated transport.DMT superfamily.CLT glutathione transporter evm_27.TU.AmTr_v1.0_scaffold00033.192 0.9092432601715437 75 AMTR_s00025p00203820 Lipid metabolism.fatty acid synthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.biotin carboxylase subunit evm_27.TU.AmTr_v1.0_scaffold00025.261 0.9082114485286966 66 AMTR_s00004p00048050 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate dehydratase evm_27.TU.AmTr_v1.0_scaffold00004.31 0.9080543910542328 67 AMTR_s00046p00150030 RNA processing.ribonuclease activities.RNase P ribonuclease activities.protein-only RNase P evm_27.TU.AmTr_v1.0_scaffold00046.80 0.9068136266376224 68 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9067458622639416 69 AMTR_s00004p00093740 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00004.76 0.9059833989704529 95 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.9059215737133819 74 AMTR_s00090p00178540 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.ISE2 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.110 0.9049383134377142 75 AMTR_s00142p00090900 evm_27.TU.AmTr_v1.0_scaffold00142.59 0.9048086731415316 76 AMTR_s00049p00107230 evm_27.TU.AmTr_v1.0_scaffold00049.81 0.9047506755595423 77 AMTR_s00005p00266220 evm_27.TU.AmTr_v1.0_scaffold00005.229 0.90460546985541 78 AMTR_s00056p00047160 Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00056.29 0.9041620539758317 79 AMTR_s00147p00073200 evm_27.TU.AmTr_v1.0_scaffold00147.35 0.9040074854328692 80 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00079.39 0.9039744190870734 81 AMTR_s00001p00259120 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component evm_27.TU.AmTr_v1.0_scaffold00001.365 0.9033108276314397 82 AMTR_s00066p00141740 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.acetolactate synthase complex.regulatory subunit evm_27.TU.AmTr_v1.0_scaffold00066.141 0.9032123612117499 83 AMTR_s00061p00182640 RNA processing.organelle machineries.ribonuclease activities.RNase E endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00061.204 0.9032103880324346 84 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.9029661128632454 86 AMTR_s00033p00026050 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA-type) evm_27.TU.AmTr_v1.0_scaffold00033.11 0.9029505034143066 87 AMTR_s00077p00105110 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00077.90 0.902887124671523 89 AMTR_s00044p00032580 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP4/FSD3 component evm_27.TU.AmTr_v1.0_scaffold00044.9 0.9027556614336708 90 AMTR_s00062p00102370 Cell cycle.organelle machineries.DNA replication.DNA polymerase POP evm_27.TU.AmTr_v1.0_scaffold00062.75 0.9023692529958409 92 AMTR_s00106p00104330 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00106.74 0.9016307574672827 95 AMTR_s00033p00195130 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.156 0.9011467068515161 96 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.9010348948448473 98 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9004378887577495 99 AMTR_s00005p00062400 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.PRDA1 FSD2-interacting factor evm_27.TU.AmTr_v1.0_scaffold00005.9 0.900356467999756 100