Sequence Description Alias PCC hrr AMTR_s00059p00176390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO evm_27.TU.AmTr_v1.0_scaffold00059.181 0.9818691361770743 1 AMTR_s00007p00193800 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaK evm_27.TU.AmTr_v1.0_scaffold00007.164 0.975678316382269 2 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component evm_27.TU.AmTr_v1.0_scaffold00088.122 0.9684354161241097 3 AMTR_s00079p00061090 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit evm_27.TU.AmTr_v1.0_scaffold00079.19 0.9623443912578813 4 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component evm_27.TU.AmTr_v1.0_scaffold00099.124 0.9606408894513127 9 AMTR_s00039p00131500 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaE evm_27.TU.AmTr_v1.0_scaffold00039.86 0.958540838272071 6 AMTR_s00037p00234060 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component evm_27.TU.AmTr_v1.0_scaffold00037.152 0.9561139929392488 7 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase evm_27.TU.AmTr_v1.0_scaffold00152.29 0.9517165242547079 8 AMTR_s00073p00061640 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor evm_27.TU.AmTr_v1.0_scaffold00073.16 0.9493737318909056 9 AMTR_s00001p00142570 Photosynthesis.photophosphorylation.Cytb6/f to PS-I electron carriers.plastocyanin evm_27.TU.AmTr_v1.0_scaffold00001.122 0.9491746498273743 14 AMTR_s00024p00248370 evm_27.TU.AmTr_v1.0_scaffold00024.319 0.947888516264333 11 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9462789237602676 12 AMTR_s00098p00157610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC16 component PsbQ evm_27.TU.AmTr_v1.0_scaffold00098.46 0.9425666503390745 19 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin evm_27.TU.AmTr_v1.0_scaffold00071.5 0.9408893542604421 14 AMTR_s00002p00266120 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbW evm_27.TU.AmTr_v1.0_scaffold00002.505 0.9396196636034004 15 AMTR_s00092p00167540 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond evm_27.TU.AmTr_v1.0_scaffold00092.149 0.9385589339182892 16 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein evm_27.TU.AmTr_v1.0_scaffold00025.118 0.9349135576778508 22 AMTR_s00007p00081670 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC23 component PsbP evm_27.TU.AmTr_v1.0_scaffold00007.46 0.9332536019152738 20 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG evm_27.TU.AmTr_v1.0_scaffold00061.40 0.9311277415427364 19 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00016.302 0.9311055534685497 20 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD evm_27.TU.AmTr_v1.0_scaffold00103.18 0.9301304716382757 21 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor evm_27.TU.AmTr_v1.0_scaffold00099.164 0.9278362981288586 22 AMTR_s00058p00191040 Carbonic anhydrase, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00058.190 0.9276532877341288 23 AMTR_s00024p00218080 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbX evm_27.TU.AmTr_v1.0_scaffold00024.208 0.9260209275919873 24 AMTR_s00011p00241810 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CIB transcriptional regulator evm_27.TU.AmTr_v1.0_scaffold00011.138 0.9253203640607003 25 AMTR_s00010p00265990 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL2/PQL1 component evm_27.TU.AmTr_v1.0_scaffold00010.518 0.9246490317804068 26 AMTR_s00209p00025500 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaN evm_27.TU.AmTr_v1.0_scaffold00209.5 0.9239040173113279 27 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.9179528474023878 28 AMTR_s00029p00187590 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00029.249 0.9160291687911535 29 AMTR_s00149p00098530 evm_27.TU.AmTr_v1.0_scaffold00149.83 0.915001482751145 30 AMTR_s00091p00081150 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00091.27 0.9112577864368121 31 AMTR_s00001p00175920 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase evm_27.TU.AmTr_v1.0_scaffold00001.167 0.9109326030218686 32 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00010.221 0.9095522782041483 33 AMTR_s00033p00240030 L-type lectin-domain containing receptor kinase IX.2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.255 0.9089052732287446 34 AMTR_s00032p00144550 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaF evm_27.TU.AmTr_v1.0_scaffold00032.106 0.905322111771517 35 AMTR_s00046p00093500 Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit b_ evm_27.TU.AmTr_v1.0_scaffold00046.51 0.9032438653519572 36 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase evm_27.TU.AmTr_v1.0_scaffold00029.342 0.9026889221976013 37 AMTR_s00149p00054540 Photosynthesis.photorespiration.glycine cleavage system.H-protein lipoamide-containing component evm_27.TU.AmTr_v1.0_scaffold00149.34 0.9024590404921091 68 AMTR_s00077p00172700 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhN component evm_27.TU.AmTr_v1.0_scaffold00077.191 0.9022468283417823 39 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component evm_27.TU.AmTr_v1.0_scaffold00029.405 0.9019379931126479 55 AMTR_s00107p00150560 evm_27.TU.AmTr_v1.0_scaffold00107.45 0.9014441118675391 41 AMTR_s00049p00157390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY evm_27.TU.AmTr_v1.0_scaffold00049.142 0.9009048311614485 56 AMTR_s00033p00142400 evm_27.TU.AmTr_v1.0_scaffold00033.84 0.899138711760112 43 AMTR_s00037p00168570 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma evm_27.TU.AmTr_v1.0_scaffold00037.79 0.8987208612705102 44 AMTR_s00070p00129320 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin electron carrier evm_27.TU.AmTr_v1.0_scaffold00070.69 0.8940733600607841 45 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8939149911553391 46 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.8938266787103636 52 AMTR_s00018p00243310 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00018.150 0.8922562361192843 48 AMTR_s00062p00151050 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00062.139 0.8914497156066012 49 AMTR_s00106p00057410 evm_27.TU.AmTr_v1.0_scaffold00106.33 0.8913328147343427 50 AMTR_s00058p00047610 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transketolase evm_27.TU.AmTr_v1.0_scaffold00058.18 0.8900333782180835 52 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8897412184813691 53 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.8893971512551939 86 AMTR_s00062p00201460 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor evm_27.TU.AmTr_v1.0_scaffold00062.212 0.8880571619862657 55 AMTR_s00022p00205270 Phytohormones.jasmonic acid.synthesis.13-lipoxygenase evm_27.TU.AmTr_v1.0_scaffold00022.242 0.8873350028942028 56 AMTR_s00007p00263960 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) evm_27.TU.AmTr_v1.0_scaffold00007.343 0.8869731854461625 58 AMTR_s00001p00269430 Probable carboxylesterase 8 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.439 0.8867652880437081 59 AMTR_s00009p00163120 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00009.90 0.8851153967285343 60 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.8836061331561677 61 AMTR_s00045p00175560 Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.209 0.8833992402426677 62 AMTR_s00006p00250270 Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.149 0.8824864792127548 63 AMTR_s00053p00027630 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00053.10 0.8818675154355035 64 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8813280291920449 65 AMTR_s00022p00232380 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit delta evm_27.TU.AmTr_v1.0_scaffold00022.315 0.8804221652551191 74 AMTR_s00106p00037610 Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.18 0.879973658199764 67 AMTR_s00032p00227150 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00032.244 0.879391485088988 68 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component evm_27.TU.AmTr_v1.0_scaffold00098.43 0.8788427845838693 83 AMTR_s00089p00043950 RNA biosynthesis.transcriptional activation.bHLH transcription factor evm_27.TU.AmTr_v1.0_scaffold00089.12 0.8781298054379413 70 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor evm_27.TU.AmTr_v1.0_scaffold00049.26 0.876756697725959 71 AMTR_s00061p00174500 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCS cytochrome f/c6 maturation system (system II).CcdA component evm_27.TU.AmTr_v1.0_scaffold00061.187 0.8764704868588945 76 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00001.249 0.876429547581145 73 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.8756607808698904 74 AMTR_s00019p00256720 Uncharacterized protein At4g15545 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.456 0.8754927431911927 75 AMTR_s00095p00166740 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor evm_27.TU.AmTr_v1.0_scaffold00095.146 0.874763577733682 76 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.8732891029162985 78 AMTR_s00078p00063510 Photosynthesis.calvin cycle.phosphopentose epimerase evm_27.TU.AmTr_v1.0_scaffold00078.34 0.8732445016041872 78 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8722027504536988 79 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00166.36 0.8711288079266086 81 AMTR_s00024p00238310 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.270 0.8707869073124062 82 AMTR_s00016p00087320 evm_27.TU.AmTr_v1.0_scaffold00016.49 0.8706185811700116 83 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8701181767748654 84 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) evm_27.TU.AmTr_v1.0_scaffold00005.125 0.8697218196488555 85 AMTR_s00029p00134700 evm_27.TU.AmTr_v1.0_scaffold00029.153 0.8678473248588943 86 AMTR_s00131p00114510 Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00131.86 0.8674077684070848 87 AMTR_s00009p00268360 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb6-type component evm_27.TU.AmTr_v1.0_scaffold00009.423 0.8673698501099989 88 AMTR_s00170p00069910 evm_27.TU.AmTr_v1.0_scaffold00170.33 0.8644467121184274 89 AMTR_s00024p00186840 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00024.151 0.8641369525786262 90 AMTR_s00032p00222720 Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00032.231 0.8629616233295204 92 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component evm_27.TU.AmTr_v1.0_scaffold00010.88 0.8619505854296764 98 AMTR_s00022p00242510 Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.352 0.860824550117962 95 AMTR_s00012p00255830 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase evm_27.TU.AmTr_v1.0_scaffold00012.292 0.8605098617185347 96 AMTR_s00001p00233320 evm_27.TU.AmTr_v1.0_scaffold00001.251 0.8586781493846232 98 AMTR_s00059p00164750 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.BEL transcription factor evm_27.TU.AmTr_v1.0_scaffold00059.154 0.8584977676244672 99 AMTR_s00016p00088520 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein evm_27.TU.AmTr_v1.0_scaffold00016.50 0.8584851962058591 100