Sequence Description Alias PCC hrr AMTR_s00025p00041760 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.20 0.9603229884657689 2 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.9342952395423627 7 AMTR_s00095p00128730 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.CRD1 catalytic component evm_27.TU.AmTr_v1.0_scaffold00095.88 0.9342217161384424 7 AMTR_s00046p00146170 evm_27.TU.AmTr_v1.0_scaffold00046.79 0.9336391693020154 14 AMTR_s00098p00154060 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL3/PQL2 component evm_27.TU.AmTr_v1.0_scaffold00098.43 0.9336148861638074 10 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9335810615242189 10 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase evm_27.TU.AmTr_v1.0_scaffold00060.55 0.9334481374489009 9 AMTR_s00016p00108610 Photosynthesis.photophosphorylation.linear electron flow.ferredoxin-NADP reductase (FNR) activity.ferredoxin-NADP oxidoreductase evm_27.TU.AmTr_v1.0_scaffold00016.69 0.9331857707098578 22 AMTR_s00071p00149740 Photosynthesis.photophosphorylation.photosystem II.photoprotection.MPH1 protein evm_27.TU.AmTr_v1.0_scaffold00071.135 0.9318244470546825 25 AMTR_s00058p00182650 Enzyme classification.EC_1 oxidoreductases.EC_1.3 oxidoreductase acting on CH-CH group of donor evm_27.TU.AmTr_v1.0_scaffold00058.174 0.9261017082130378 13 AMTR_s00046p00219150 Photosynthesis.photorespiration.serine hydroxymethyltransferase evm_27.TU.AmTr_v1.0_scaffold00046.151 0.9254845024440116 11 AMTR_s00029p00134700 evm_27.TU.AmTr_v1.0_scaffold00029.153 0.9245619662627692 12 AMTR_s00025p00042290 Carbohydrate metabolism.starch metabolism.synthesis.ADP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00025.21 0.9238428605148697 15 AMTR_s00092p00018230 Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.4 0.922796237547825 19 AMTR_s00072p00084990 Photosynthesis.photophosphorylation.cytochrome b6/f complex.Rieske iron-sulfur component PetC evm_27.TU.AmTr_v1.0_scaffold00072.37 0.9206856229009239 33 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.9205873828449063 16 AMTR_s00012p00257120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC16 component evm_27.TU.AmTr_v1.0_scaffold00012.301 0.9193827652635268 40 AMTR_s00101p00121540 PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.95 0.9192547662957722 18 AMTR_s00001p00191890 Photosynthesis.photophosphorylation.cyclic electron flow.PGR5/PGRL1 complex.PGRL1-like component evm_27.TU.AmTr_v1.0_scaffold00001.191 0.916760826130533 25 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein evm_27.TU.AmTr_v1.0_scaffold00025.118 0.9160295968588383 42 AMTR_s00003p00211760 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00003.202 0.915862275591642 21 AMTR_s00061p00196800 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00061.232 0.9133498570066145 54 AMTR_s00049p00157390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY evm_27.TU.AmTr_v1.0_scaffold00049.142 0.9117296717902005 48 AMTR_s00010p00265990 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL2/PQL1 component evm_27.TU.AmTr_v1.0_scaffold00010.518 0.9089565562573921 28 AMTR_s00017p00154940 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).PsbS-dependent machinery.PsbS protein evm_27.TU.AmTr_v1.0_scaffold00017.71 0.9088961413403116 25 AMTR_s00087p00141000 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaL evm_27.TU.AmTr_v1.0_scaffold00087.44 0.9082158125489067 48 AMTR_s00119p00060890 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00119.41 0.9071439101115043 27 AMTR_s00004p00145140 evm_27.TU.AmTr_v1.0_scaffold00004.142 0.9061043385608017 28 AMTR_s00093p00107560 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR3 evm_27.TU.AmTr_v1.0_scaffold00093.37 0.9058998243285209 41 AMTR_s00004p00065250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.MET1 protein evm_27.TU.AmTr_v1.0_scaffold00004.48 0.9045582980310093 33 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component evm_27.TU.AmTr_v1.0_scaffold00029.405 0.9043317057357221 50 AMTR_s00025p00156240 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.176 0.9025353320934543 32 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor evm_27.TU.AmTr_v1.0_scaffold00049.26 0.9010572111157464 33 AMTR_s00059p00183340 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.HCF164 thioredoxin-like factor evm_27.TU.AmTr_v1.0_scaffold00059.198 0.9001289184585781 34 AMTR_s00010p00131320 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhL component evm_27.TU.AmTr_v1.0_scaffold00010.88 0.8995421805702325 39 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00016.302 0.8983587265605479 56 AMTR_s00079p00061090 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo dimer.small subunit evm_27.TU.AmTr_v1.0_scaffold00079.19 0.8977547435788072 51 AMTR_s00149p00054540 Photosynthesis.photorespiration.glycine cleavage system.H-protein lipoamide-containing component evm_27.TU.AmTr_v1.0_scaffold00149.34 0.8971542542620974 73 AMTR_s00018p00255680 Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.171 0.8969987696727761 39 AMTR_s00029p00122880 Disease resistance protein RPS5 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.137 0.8955338676772726 62 AMTR_s00002p00256470 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00002.408 0.8882812557428227 71 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.8875257127637042 47 AMTR_s00071p00185160 evm_27.TU.AmTr_v1.0_scaffold00071.193 0.8873999566874758 43 AMTR_s00006p00252810 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp90 family.Hsp90 protein evm_27.TU.AmTr_v1.0_scaffold00006.165 0.8870393921745359 84 AMTR_s00081p00063880 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase evm_27.TU.AmTr_v1.0_scaffold00081.20 0.8866744852181974 45 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8864771151345701 59 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component evm_27.TU.AmTr_v1.0_scaffold00012.92 0.8858481992062137 96 AMTR_s00044p00105130 evm_27.TU.AmTr_v1.0_scaffold00044.75 0.8856231889650159 72 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.8851374450745252 52 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.884455672325695 86 AMTR_s00007p00263960 Redox homeostasis.chloroplast redox homeostasis.2-Cys peroxiredoxin activities.atypical 2-Cys peroxiredoxin (PrxQ) evm_27.TU.AmTr_v1.0_scaffold00007.343 0.8825845959550573 61 AMTR_s00016p00074040 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB1 component evm_27.TU.AmTr_v1.0_scaffold00016.38 0.8819939901374391 65 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.280 0.881671034418587 54 AMTR_s00002p00197820 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.183 0.8810332865592937 64 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8805917038414202 89 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.6 0.8787634303425969 69 AMTR_s00059p00166490 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic62 component evm_27.TU.AmTr_v1.0_scaffold00059.157 0.878639978640662 70 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor evm_27.TU.AmTr_v1.0_scaffold00109.135 0.8785205756049626 70 AMTR_s00010p00265920 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB4/NDF6 component evm_27.TU.AmTr_v1.0_scaffold00010.515 0.87740942344643 66 AMTR_s00098p00157610 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.Viridiplantae-specific components.OEC16 component PsbQ evm_27.TU.AmTr_v1.0_scaffold00098.46 0.8758536137166666 74 AMTR_s00024p00220440 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.electron donor-binding subcomplex E.NdhU component evm_27.TU.AmTr_v1.0_scaffold00024.215 0.8746535294380697 69 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.57 0.874622789726272 63 AMTR_s00055p00165940 Protein biosynthesis.aminoacyl-tRNA synthetase activities.threonine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00055.86 0.8737020570201247 90 AMTR_s00012p00252840 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.one-helix LHC-related protein group.OHP1 protein evm_27.TU.AmTr_v1.0_scaffold00012.263 0.8727204209188008 65 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase evm_27.TU.AmTr_v1.0_scaffold00048.87 0.8720568559241627 69 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component evm_27.TU.AmTr_v1.0_scaffold00099.124 0.8705148890910309 78 AMTR_s00089p00073940 evm_27.TU.AmTr_v1.0_scaffold00089.34 0.869250201874272 68 AMTR_s00010p00264770 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa4-type component evm_27.TU.AmTr_v1.0_scaffold00010.505 0.8691603864093218 69 AMTR_s00106p00039260 Carbohydrate metabolism.mannose metabolism.phosphomannomutase evm_27.TU.AmTr_v1.0_scaffold00106.20 0.8681499514424391 70 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG evm_27.TU.AmTr_v1.0_scaffold00061.40 0.8677906052507538 76 AMTR_s00062p00201460 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor evm_27.TU.AmTr_v1.0_scaffold00062.212 0.8676183421521586 77 AMTR_s00003p00270950 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR9 evm_27.TU.AmTr_v1.0_scaffold00003.446 0.8673401338131685 89 AMTR_s00040p00174700 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00040.163 0.867081014517138 75 AMTR_s00096p00053280 evm_27.TU.AmTr_v1.0_scaffold00096.21 0.8664542950565254 76 AMTR_s00063p00191490 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamate synthase activities.Fd-dependent glutamate synthase evm_27.TU.AmTr_v1.0_scaffold00063.73 0.866445015381609 77 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD evm_27.TU.AmTr_v1.0_scaffold00103.18 0.8663245444726507 85 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor evm_27.TU.AmTr_v1.0_scaffold00099.164 0.866220766469412 90 AMTR_s00009p00233000 evm_27.TU.AmTr_v1.0_scaffold00009.187 0.8647931962259594 87 AMTR_s00003p00105430 Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00003.71 0.8634358826771272 81 AMTR_s00092p00098850 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00092.56 0.8628464972144435 82 AMTR_s00068p00047550 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).FLAP1 NPQ-regulator protein evm_27.TU.AmTr_v1.0_scaffold00068.17 0.862141474254977 83 AMTR_s00069p00125390 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR1 evm_27.TU.AmTr_v1.0_scaffold00069.85 0.8615079778392791 85 AMTR_s00032p00120910 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00032.84 0.8606386809514013 86 AMTR_s00149p00067730 evm_27.TU.AmTr_v1.0_scaffold00149.45 0.8595003620071923 88 AMTR_s00009p00268360 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb6-type component evm_27.TU.AmTr_v1.0_scaffold00009.423 0.8585196144249494 90 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component evm_27.TU.AmTr_v1.0_scaffold00088.122 0.8583641073463825 91 AMTR_s00076p00039590 Phytohormones.abscisic acid.synthesis.ABA1 zeaxanthin epoxidase evm_27.TU.AmTr_v1.0_scaffold00076.7 0.8583156535218374 92 AMTR_s00065p00043720 Redox homeostasis.hydrogen peroxide removal.glutathione peroxidase evm_27.TU.AmTr_v1.0_scaffold00065.18 0.8561820204927775 96 AMTR_s00122p00139490 Root phototropism protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00122.75 0.85581373105145 97 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.8547516508668489 100