Sequence Description Alias PCC hrr AMTR_s00022p00249930 evm_27.TU.AmTr_v1.0_scaffold00022.381 0.9620740926351953 1 AMTR_s00010p00259870 evm_27.TU.AmTr_v1.0_scaffold00010.430 0.9381091316168993 7 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9373272098263519 7 AMTR_s00023p00232870 Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00023.190 0.9332528684759429 4 AMTR_s00007p00031450 evm_27.TU.AmTr_v1.0_scaffold00007.11 0.9327117171685027 5 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9314584586734387 22 AMTR_s00006p00258450 Coenzyme metabolism.phylloquinone synthesis.multifunctional phylloquinone synthesis protein (PHYLLO) evm_27.TU.AmTr_v1.0_scaffold00006.206 0.9304575625333649 8 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9301655024110843 8 AMTR_s00019p00219410 evm_27.TU.AmTr_v1.0_scaffold00019.273 0.9300456728276592 15 AMTR_s00013p00233820 evm_27.TU.AmTr_v1.0_scaffold00013.185 0.9298564920998756 10 AMTR_s00025p00188660 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.helicase (SEN1) evm_27.TU.AmTr_v1.0_scaffold00025.230 0.9293993190587907 42 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.9275968369257389 19 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9257281774715694 42 AMTR_s00057p00162170 Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.151 0.924988040321688 14 AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9229693921336726 32 AMTR_s00023p00012750 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metal-citrate complex transporter (FRD-type) evm_27.TU.AmTr_v1.0_scaffold00023.3 0.9225569032245391 16 AMTR_s00052p00157970 evm_27.TU.AmTr_v1.0_scaffold00052.66 0.922211743299082 17 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9216062820748927 18 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.9206576537895242 19 AMTR_s00021p00166450 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00021.120 0.9204546434884504 80 AMTR_s00038p00234220 Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00038.234 0.9197249755068374 21 AMTR_s00032p00018130 Obg-like ATPase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00032.3 0.9162604555126367 30 AMTR_s00025p00142780 Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00025.155 0.9162204340435055 60 AMTR_s00171p00047960 evm_27.TU.AmTr_v1.0_scaffold00171.29 0.9157329290463164 24 AMTR_s00061p00169610 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00061.177 0.9154958786452561 25 AMTR_s00049p00169350 Protein STICHEL-like 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.158 0.9138330209561807 26 AMTR_s00048p00223180 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00048.210 0.9124323304125563 27 AMTR_s00089p00093330 Protein biosynthesis.aminoacyl-tRNA synthetase activities.lysine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00089.48 0.9117913948076828 28 AMTR_s00081p00136350 Protein biosynthesis.organelle translation machineries.peptide deformylation.PDF formylmethionine deformylase evm_27.TU.AmTr_v1.0_scaffold00081.52 0.9105663879385032 30 AMTR_s00006p00260480 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp60 family.Hsp60 protein evm_27.TU.AmTr_v1.0_scaffold00006.222 0.9102188058602173 30 AMTR_s00101p00041820 evm_27.TU.AmTr_v1.0_scaffold00101.13 0.9087773684353295 31 AMTR_s00003p00263110 Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana 0.9086607789402561 41 AMTR_s00022p00127120 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00022.118 0.9080669582185654 33 AMTR_s00029p00240470 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.410 0.9079260373204785 36 AMTR_s00106p00104330 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group evm_27.TU.AmTr_v1.0_scaffold00106.74 0.9077819273061766 35 AMTR_s00071p00199450 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter evm_27.TU.AmTr_v1.0_scaffold00071.217 0.9055923721282881 54 AMTR_s00010p00251120 evm_27.TU.AmTr_v1.0_scaffold00010.357 0.9043078310471547 37 AMTR_s00145p00079180 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.lumen subcomplex L.PnsL1 component evm_27.TU.AmTr_v1.0_scaffold00145.28 0.9030525014835504 39 AMTR_s00148p00069790 Protein modification.phosphorylation.TKL kinase superfamily.RLCK-VIII kinase families.RLCK-VIII-sis kinase evm_27.TU.AmTr_v1.0_scaffold00148.43 0.9021507800717569 40 AMTR_s00032p00205750 evm_27.TU.AmTr_v1.0_scaffold00032.196 0.9018812790723122 41 AMTR_s00009p00265580 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.383 0.8999260774527266 44 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.899699668857453 77 AMTR_s00002p00198580 Uncharacterized protein At4g17910 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.186 0.899433855944312 47 AMTR_s00033p00195130 Protein biosynthesis.aminoacyl-tRNA synthetase activities.cysteine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.156 0.8992837876809628 48 AMTR_s00062p00213230 Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana 0.8977654917417396 50 AMTR_s00001p00269990 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT3 protease evm_27.TU.AmTr_v1.0_scaffold00001.453 0.8972964124770919 62 AMTR_s00004p00076010 Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.59 0.8967286238663346 53 AMTR_s00062p00145630 CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00062.132 0.8955735559014862 73 AMTR_s00069p00147710 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00069.114 0.8951642210939788 80 AMTR_s00058p00093170 evm_27.TU.AmTr_v1.0_scaffold00058.50 0.8943135493702016 58 AMTR_s00072p00102490 evm_27.TU.AmTr_v1.0_scaffold00072.49 0.8939256611928375 59 AMTR_s00108p00153640 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp70 family.P58 Hsp70-co-chaperone evm_27.TU.AmTr_v1.0_scaffold00108.51 0.8930422762185835 62 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8925343835387918 95 AMTR_s00004p00143390 Protein biosynthesis.aminoacyl-tRNA synthetase activities.valine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00004.140 0.8917701294380991 95 AMTR_s00109p00113060 Redox homeostasis.low-molecular-weight scavengers.tocopherol biosynthesis.tocopherol cyclase (VTE1/TC) evm_27.TU.AmTr_v1.0_scaffold00109.111 0.8916834119155318 67 AMTR_s00092p00109950 Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.68 0.891545293612783 68 AMTR_s00153p00036670 Lipid metabolism.galactolipid and sulfolipid synthesis.plastidial UDP-glucose pyrophosphorylase evm_27.TU.AmTr_v1.0_scaffold00153.14 0.8911181933230908 70 AMTR_s00012p00228300 Factor of DNA methylation 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00012.179 0.8910867779508311 71 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8906361244991559 73 AMTR_s00050p00221590 Protein modification.peptide maturation.plastid.CtpA carboxy-terminal processing peptidase evm_27.TU.AmTr_v1.0_scaffold00050.87 0.8881357897980912 75 AMTR_s00099p00159350 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyll dephytylase (CLD) evm_27.TU.AmTr_v1.0_scaffold00099.158 0.8880229611049957 76 AMTR_s00059p00121300 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.chlorophyll b reductase complex.NOL component evm_27.TU.AmTr_v1.0_scaffold00059.95 0.887604739879788 78 AMTR_s00025p00248100 Probable transmembrane GTPase FZO-like, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.402 0.8867959179043144 80 AMTR_s00066p00184560 Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00066.232 0.8857941105036046 85 AMTR_s00122p00077720 Photosynthesis.photorespiration.glycerate kinase evm_27.TU.AmTr_v1.0_scaffold00122.28 0.8857905949385012 86 AMTR_s00131p00066980 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00131.39 0.8853848588175652 94 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.8851660091299706 93 AMTR_s00106p00046740 Protein biosynthesis.aminoacyl-tRNA synthetase activities.leucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00106.25 0.8843498949487592 92 AMTR_s00078p00138290 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCA transporter evm_27.TU.AmTr_v1.0_scaffold00078.113 0.8839593712324345 96 AMTR_s00010p00207700 evm_27.TU.AmTr_v1.0_scaffold00010.200 0.8839415369315449 98 AMTR_s00048p00222810 evm_27.TU.AmTr_v1.0_scaffold00048.208 0.8837712588041835 99 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.883630800403594 100