Sequence Description Alias PCC hrr AT5G66190 ferredoxin-NADP(+)-oxidoreductase 1 FNR1, ATLFNR1 0.9036733234365832 15 AT1G45474 photosystem I light harvesting complex gene 5 LHCA5 0.8960472092264045 13 AT5G43750 NAD(P)H dehydrogenase 18 NDH18 0.8924169667930002 23 AT1G50320 thioredoxin X THX, ATHX, ATX 0.8895169076421175 4 AT5G07020 proline-rich family protein 0.8738353170783304 20 AT2G46820 photosystem I P subunit PTAC8, TMP14, PSI-P, PSAP 0.8683558655867277 22 AT1G03680 thioredoxin M-type 1 ATHM1, THM1, TRX-M1, ATM1 0.8664824846618073 7 AT3G15360 thioredoxin M-type 4 ATHM4, TRX-M4, ATM4 0.8633411750780324 8 AT3G63140 chloroplast stem-loop binding protein of 41 kDa CSP41A 0.8631788685785651 34 AT1G44575 Chlorophyll A-B binding family protein NPQ4, PSBS 0.8625382641700218 26 AT1G65230 Uncharacterized conserved protein (DUF2358) 0.857644605716772 11 AT3G10060 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.85666858023702 20 AT3G54050 high cyclic electron flow 1 HCEF1 0.8559392130532024 62 AT1G74730 Protein of unknown function (DUF1118) 0.8537997581124507 50 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein EDA3 0.8532555421324329 45 AT4G21210 PPDK regulatory protein ATRP1, RP1 0.8531510635193343 16 AT2G04039 unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 0.8508151009321088 17 AT1G20340 Cupredoxin superfamily protein DRT112, PETE2 0.8488651759384438 38 AT2G39470 PsbP-like protein 2 PPL2 0.8487811978502564 76 AT1G09340 chloroplast RNA binding CRB, HIP1.3, CSP41B 0.8483501522138718 55 AT5G16710 dehydroascorbate reductase 1 DHAR3 0.8482166754894199 21 AT4G32260 ATPase, F0 complex, subunit B/B', bacterial/chloroplast 0.8481225159415685 22 AT1G42970 glyceraldehyde-3-phosphate dehydrogenase B subunit GAPB 0.8470558110123367 61 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.846276644085892 60 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain family protein 0.8443841411544694 25 AT1G63970 isoprenoid F ISPF, MECPS 0.8440647475964569 26 AT3G55800 sedoheptulose-bisphosphatase SBPASE 0.8421978307352842 80 AT1G54780 thylakoid lumen 18.3 kDa protein TLP18.3 0.8417335236700395 28 AT1G56500 haloacid dehalogenase-like hydrolase family protein 0.8402209234172051 57 AT2G01110 Sec-independent periplasmic protein translocase PGA2, APG2, TATC, UNE3 0.8373218241692089 30 AT4G22890 PGR5-LIKE A PGR5-LIKE A 0.8366982059065525 39 AT5G58260 oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor 0.8354893038413708 55 AT4G03280 photosynthetic electron transfer C PGR1, PETC 0.8339179695506183 57 AT1G71500 Rieske (2Fe-2S) domain-containing protein 0.8338191053153906 73 AT2G06520 photosystem II subunit X PSBX 0.8332914561984739 35 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8323675779136469 36 AT5G36790 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 0.8317006058542118 68 AT5G36700 2-phosphoglycolate phosphatase 1 PGLP1, ATPGLP1 0.8317006058542118 68 AT4G09650 ATP synthase delta-subunit gene ATPD 0.8316652695688186 64 AT3G46780 plastid transcriptionally active 16 PTAC16 0.831003059648302 71 AT1G70760 inorganic carbon transport protein-related CRR23 0.8308645828631088 45 AT1G77090 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 0.8299007100353024 51 AT1G15980 NDH-dependent cyclic electron flow 1 NDH48, NDF1 0.8294480913558298 72 AT1G06680 photosystem II subunit P-1 OE23, OEE2, PSBP-1, PSII-P 0.8280411665382069 44 AT4G01150 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 0.8277190698805488 45 AT2G32480 ARABIDOPSIS SERIN PROTEASE ARASP 0.8276269457077892 46 AT4G02530 chloroplast thylakoid lumen protein 0.8272121235428388 89 AT4G37930 serine transhydroxymethyltransferase 1 STM, SHM1, SHMT1 0.8267163616066394 61 AT2G43560 FKBP-like peptidyl-prolyl cis-trans isomerase family protein 0.8262059291578817 85 AT1G73060 Low PSII Accumulation 3 LPA3 0.8240548854953396 53 AT1G55670 photosystem I subunit G PSAG 0.8238581739100167 51 AT5G06290 2-cysteine peroxiredoxin B 2CPB, 2-Cys Prx B 0.8225506763137714 66 AT5G09660 peroxisomal NAD-malate dehydrogenase 2 PMDH2 0.8221837976413335 70 AT3G12780 phosphoglycerate kinase 1 PGK1 0.822098654386761 79 AT2G17695 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 0.8211209528879369 55 AT3G47070 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 0.8181519124197691 57 AT4G34190 stress enhanced protein 1 SEP1 0.8162842878626255 80 AT4G21280 photosystem II subunit QA PSBQA, PSBQ-1, PSBQ 0.8155213066475453 91 AT3G16140 photosystem I subunit H-1 PSAH-1 0.8154968534698022 60 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 0.8152316217146776 61 AT4G22830 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 0.8146288882187572 62 AT1G51110 Plastid-lipid associated protein PAP / fibrillin family protein 0.8145490798547468 73 AT1G32080 membrane protein, putative 0.8126153528545758 75 AT1G34000 one-helix protein 2 OHP2 0.811182439675923 65 AT1G18060 unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8103134793336387 67 AT1G03630 protochlorophyllide oxidoreductase C POR C, PORC 0.8098592053126312 91 AT4G10300 RmlC-like cupins superfamily protein 0.8077252463462844 69 AT3G04790 Ribose 5-phosphate isomerase, type A protein 0.8064831921613835 88 AT1G43560 thioredoxin Y2 Aty2, ty2 0.8052103891145997 100 AT1G14150 PsbQ-like 2 PQL1, PQL2 0.8043238894098829 73 AT3G51510 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 0.804246634734144 74 AT5G27290 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 0.8041264563180899 75 AT1G44920 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 0.8034568533787378 76 AT5G08050 Protein of unknown function (DUF1118) 0.802648065076793 100 AT1G67090 ribulose bisphosphate carboxylase small chain 1A RBCS1A 0.8019770406041563 78 AT5G38660 acclimation of photosynthesis to environment APE1 0.8013279471556848 80 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 0.8004184883792815 82 AT1G18730 NDH dependent flow 6 NDF6 0.8001348066787983 83 AT1G54500 Rubredoxin-like superfamily protein 0.7998702023677238 90 AT2G30570 photosystem II reaction center W PSBW 0.7988738126455791 85 AT2G21960 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 0.7948983752140717 90 AT5G35630 glutamine synthetase 2 GS2, ATGSL1, GLN2 0.7945627307361862 91 AT1G52230 photosystem I subunit H2 PSAH2, PSI-H, PSAH-2 0.7945346251048467 92 AT1G31190 myo-inositol monophosphatase like 1 IMPL1 0.7934038983155168 93 AT2G30170 Protein phosphatase 2C family protein 0.7912150786801612 96 AT3G12345 unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 0.7912056097151596 98 AT1G26220 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.7904998710105297 98 AT1G75460 ATP-dependent protease La (LON) domain protein 0.7893586475899019 99 AT4G15510 Photosystem II reaction center PsbP family protein 0.787766236975255 100