Sequence Description Alias PCC hrr AMTR_s00027p00142670 Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.43 0.9557341721727185 1 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9437236881229408 3 AMTR_s00033p00135980 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00033.71 0.9363814912414405 12 AMTR_s00049p00226280 Chloroplast sensor kinase, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.272 0.9319452218774837 5 AMTR_s00057p00143260 Protein degradation.peptidase families.serine-type peptidase activities.Deg protease evm_27.TU.AmTr_v1.0_scaffold00057.128 0.9318670642464411 5 AMTR_s00017p00132450 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic110 component evm_27.TU.AmTr_v1.0_scaffold00017.54 0.9277411969215024 15 AMTR_s00077p00167440 evm_27.TU.AmTr_v1.0_scaffold00077.179 0.927110653029537 10 AMTR_s00070p00106620 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00070.53 0.9244353777468473 12 AMTR_s00031p00061040 Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.26 0.9238705522468637 9 AMTR_s00042p00221280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00042.72 0.9235926898605893 19 AMTR_s00001p00220750 evm_27.TU.AmTr_v1.0_scaffold00001.229 0.9172479104338579 48 AMTR_s00016p00206840 RNA processing.RNA modification.pseudouridylation.RluA-type RNA pseudouridine synthase evm_27.TU.AmTr_v1.0_scaffold00016.175 0.9171486233673173 13 AMTR_s00058p00171240 evm_27.TU.AmTr_v1.0_scaffold00058.156 0.9168296983374493 44 AMTR_s00056p00185560 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.ECB2/VAC1 RNA editing factor 0.9150595822341502 35 AMTR_s00031p00204460 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP54 component evm_27.TU.AmTr_v1.0_scaffold00031.99 0.9148207855137672 47 AMTR_s00048p00132600 Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.78 0.9128590022664083 28 AMTR_s00040p00213060 Protein translocation.chloroplast.inner envelope TIC translocation system.TIC-20 complex.Tic100 component evm_27.TU.AmTr_v1.0_scaffold00040.228 0.9119413260949473 59 AMTR_s00032p00225290 evm_27.TU.AmTr_v1.0_scaffold00032.241 0.9114442101354523 78 AMTR_s00024p00154360 Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00024.110 0.909787106900466 60 AMTR_s00002p00128010 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP9/FSD2 component evm_27.TU.AmTr_v1.0_scaffold00002.85 0.9089436219141613 21 AMTR_s00029p00114850 evm_27.TU.AmTr_v1.0_scaffold00029.125 0.9087820042071639 28 AMTR_s00175p00037000 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00175.11 0.908700958603773 31 AMTR_s00029p00193780 Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00029.262 0.9072581034697703 36 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.9071078591527226 38 AMTR_s00002p00236530 CDK5RAP1-like protein OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.279 0.9048058750113609 69 AMTR_s00001p00253330 evm_27.TU.AmTr_v1.0_scaffold00001.328 0.9033819360148517 60 AMTR_s00067p00115040 evm_27.TU.AmTr_v1.0_scaffold00067.92 0.9026332582417966 31 AMTR_s00071p00175860 Protein translocation.chloroplast.inner envelope TIC translocation system.Tic40 component evm_27.TU.AmTr_v1.0_scaffold00071.178 0.9019536177699524 61 AMTR_s00012p00204440 Lipid metabolism.lipid transport.plastidial lipid import.TGD lipid importer complex.TGD2 substrate binding component evm_27.TU.AmTr_v1.0_scaffold00012.139 0.9017964851222031 33 AMTR_s00121p00128060 Cell cycle.organelle machineries.organelle fission.plastid division.ARC5 dynamin-like protein evm_27.TU.AmTr_v1.0_scaffold00121.36 0.901751848500367 35 AMTR_s00058p00101170 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00058.56 0.9009453236789757 70 AMTR_s00004p00095690 RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase evm_27.TU.AmTr_v1.0_scaffold00004.78 0.9000582836423568 38 AMTR_s00211p00029350 Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00211.5 0.9000453165390719 39 AMTR_s00077p00140050 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.NFS2 cysteine desulfurase component evm_27.TU.AmTr_v1.0_scaffold00077.138 0.8993315413381684 41 AMTR_s00046p00228230 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL13 component evm_27.TU.AmTr_v1.0_scaffold00046.169 0.8987934515939155 73 AMTR_s00354p00009120 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00354.1 0.8983519989008569 53 AMTR_s00002p00090480 evm_27.TU.AmTr_v1.0_scaffold00002.47 0.8979537696538612 86 AMTR_s00136p00085920 Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00136.44 0.8974528727136971 81 AMTR_s00053p00158610 Coenzyme metabolism.tetrahydrofolate synthesis.folyl-polyglutamate synthetase evm_27.TU.AmTr_v1.0_scaffold00053.107 0.8969255853218645 47 AMTR_s00045p00116920 Protein translocation.chloroplast.thylakoid membrane Sec1 translocation system.SecA1 component evm_27.TU.AmTr_v1.0_scaffold00045.113 0.8966987662777872 83 AMTR_s00021p00131420 Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group evm_27.TU.AmTr_v1.0_scaffold00021.85 0.8962453631935595 54 AMTR_s00028p00245370 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM2-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00028.138 0.8954932198785067 88 AMTR_s00047p00218860 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.FLN2 regulatory factor evm_27.TU.AmTr_v1.0_scaffold00047.167 0.8954079897499412 80 AMTR_s00009p00240120 Coenzyme metabolism.FMN/FAD biosynthesis.pyrimidine deaminase (RibD) evm_27.TU.AmTr_v1.0_scaffold00009.211 0.8946168154476456 56 AMTR_s00071p00096930 RNA processing.RNA modification.rRNA/tRNA methylation.TRM11-TRM112 tRNA guanosine-methyltransferase complex.TRM11 component evm_27.TU.AmTr_v1.0_scaffold00071.72 0.8937830774195379 57 AMTR_s00004p00048050 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate dehydratase evm_27.TU.AmTr_v1.0_scaffold00004.31 0.8937367343475944 58 AMTR_s00018p00168540 DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.94 0.8934535490638931 60 AMTR_s00077p00182530 COP1-interacting protein 7 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00077.207 0.8927980488022906 78 AMTR_s00079p00107040 CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00079.39 0.8920801231033361 82 AMTR_s00045p00114550 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00045.110 0.8916488731399264 65 AMTR_s00003p00257280 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00003.320 0.8903367022613766 93 AMTR_s00131p00054800 evm_27.TU.AmTr_v1.0_scaffold00131.33 0.8901610629860791 69 AMTR_s00023p00208940 RNA biosynthesis.transcriptional activation.WRKY transcription factor evm_27.TU.AmTr_v1.0_scaffold00023.152 0.8899833376725585 94 AMTR_s00002p00194810 Protein degradation.peptidase families.serine-type peptidase activities.chloroplast Clp-type protease complex.ClpR non-proteolytic core component evm_27.TU.AmTr_v1.0_scaffold00002.176 0.8898810709656901 71 AMTR_s00008p00166810 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.isoamylase-type enzyme evm_27.TU.AmTr_v1.0_scaffold00008.90 0.8897115746308396 72 AMTR_s00057p00193080 Protein biosynthesis.organelle translation machineries.translation termination.PrfA-type peptide chain release factor evm_27.TU.AmTr_v1.0_scaffold00057.217 0.8889441332013848 74 AMTR_s00133p00020030 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.Whirly-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00133.2 0.888896082878522 75 AMTR_s00061p00089940 Uncharacterized protein At3g52155, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.67 0.8884072468620858 80 AMTR_s00120p00054610 evm_27.TU.AmTr_v1.0_scaffold00120.17 0.8883105075888529 81 AMTR_s00010p00226160 evm_27.TU.AmTr_v1.0_scaffold00010.253 0.8876676062020525 83 AMTR_s00017p00235750 Coenzyme metabolism.tetrahydrofolate synthesis.tetrahydrofolate (THF) interconversions.5,10-methenyl-THF synthetase evm_27.TU.AmTr_v1.0_scaffold00017.195 0.8871418433808095 86 AMTR_s00007p00177920 Carbohydrate metabolism.sucrose metabolism.regulation of sucrose/starch partitioning.bifunctional 6-phosphofructo-2-kinase and fructose-2,6-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00007.140 0.8869283726484183 88 AMTR_s00001p00259120 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component evm_27.TU.AmTr_v1.0_scaffold00001.365 0.8867872378116225 89 AMTR_s00163p00031970 evm_27.TU.AmTr_v1.0_scaffold00163.9 0.8864636037380399 92 AMTR_s00011p00265800 Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.222 0.8859722938251713 94 AMTR_s00183p00029940 evm_27.TU.AmTr_v1.0_scaffold00183.8 0.8853353956005117 98 AMTR_s00004p00107700 Protein modification.peptide maturation.plastid.EGY protease evm_27.TU.AmTr_v1.0_scaffold00004.86 0.8849633697320366 99 AMTR_s00016p00227430 Multi-process regulation.circadian clock.morning element regulation.TCP20 activation factor evm_27.TU.AmTr_v1.0_scaffold00016.212 0.8849138019914327 100