Sequence Description Alias PCC hrr AMTR_s00015p00253000 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00015.107 0.9310448261237598 4 AMTR_s00015p00252960 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00015.106 0.9242400418246238 6 AMTR_s00024p00248370 evm_27.TU.AmTr_v1.0_scaffold00024.319 0.9228611738499479 12 AMTR_s00029p00187590 Photosynthesis.calvin cycle.fructose-1,6-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00029.249 0.9228011939651208 11 AMTR_s00001p00022550 Redox homeostasis.enzymatic reactive oxygen species scavengers.catalase evm_27.TU.AmTr_v1.0_scaffold00001.7 0.9110122506846958 5 AMTR_s00012p00255830 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.regulation.ATP-dependent activase evm_27.TU.AmTr_v1.0_scaffold00012.292 0.9072286157346983 31 AMTR_s00075p00194500 evm_27.TU.AmTr_v1.0_scaffold00075.69 0.9063707571637809 11 AMTR_s00077p00172700 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex A.NdhN component evm_27.TU.AmTr_v1.0_scaffold00077.191 0.9060113609235539 19 AMTR_s00012p00254100 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.273 0.9039700356233159 26 AMTR_s00152p00085890 Photosynthesis.photorespiration.hydroxypyruvate reductase evm_27.TU.AmTr_v1.0_scaffold00152.29 0.9037126977907546 48 AMTR_s00136p00018270 Solute transport.carrier-mediated transport.MC-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00136.2 0.903255567182918 11 AMTR_s00038p00182380 External stimuli response.light.UV-A/blue light.cryptochrome-mediated photoperception.CRY cryptochrome photoreceptor evm_27.TU.AmTr_v1.0_scaffold00038.124 0.9022440739970854 25 AMTR_s00062p00183790 Solute transport.carrier-mediated transport.ZIP family.metal cation transporter (ZIP-type) evm_27.TU.AmTr_v1.0_scaffold00062.178 0.8998994060904206 16 AMTR_s00019p00256720 Uncharacterized protein At4g15545 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.456 0.8998023968260731 19 AMTR_s00170p00069910 evm_27.TU.AmTr_v1.0_scaffold00170.33 0.897179682533011 15 AMTR_s00001p00233320 evm_27.TU.AmTr_v1.0_scaffold00001.251 0.8968419857641942 16 AMTR_s00077p00148460 evm_27.TU.AmTr_v1.0_scaffold00077.149 0.8959128931445661 17 AMTR_s00001p00232760 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00001.249 0.8956848038153937 35 AMTR_s00040p00037300 Solute transport.carrier-mediated transport.DMT superfamily.UmamiT-type solute transporter evm_27.TU.AmTr_v1.0_scaffold00040.17 0.8956670592566014 19 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase evm_27.TU.AmTr_v1.0_scaffold00126.53 0.8952012359711546 20 AMTR_s00024p00110840 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00024.57 0.8922404043871908 21 AMTR_s00059p00139560 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.CCV accessory factors.AUL clathrin uncoating protein evm_27.TU.AmTr_v1.0_scaffold00059.122 0.8915172172560947 22 AMTR_s00017p00252910 Protein modification.phosphorylation.TKL kinase superfamily.RKF3 kinase evm_27.TU.AmTr_v1.0_scaffold00017.261 0.889282269395588 40 AMTR_s00095p00166740 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.DAC factor evm_27.TU.AmTr_v1.0_scaffold00095.146 0.8850795701322608 24 AMTR_s00119p00030390 Protein NCA1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00119.14 0.8842531285222477 25 AMTR_s00024p00111030 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00024.57 0.8834751625092969 26 AMTR_s00057p00205660 PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.245 0.8831753618613852 27 AMTR_s00002p00271280 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00002.619 0.8822462023314397 28 AMTR_s00073p00061640 RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor evm_27.TU.AmTr_v1.0_scaffold00073.16 0.8814529862294614 29 AMTR_s00059p00176390 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic proteins.OEC33 component PsbO evm_27.TU.AmTr_v1.0_scaffold00059.181 0.8805470121658404 78 AMTR_s00001p00262320 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.BEL transcription factor evm_27.TU.AmTr_v1.0_scaffold00001.384 0.8802443520413888 31 AMTR_s00024p00238310 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.270 0.8777390140902052 32 AMTR_s00044p00131190 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00044.119 0.8771800104148516 58 AMTR_s00010p00216200 Photosynthesis.calvin cycle.sedoheptulose-1,7-bisphosphatase evm_27.TU.AmTr_v1.0_scaffold00010.221 0.877067407181263 83 AMTR_s00058p00047610 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transketolase evm_27.TU.AmTr_v1.0_scaffold00058.18 0.8751027075056526 38 AMTR_s00091p00081150 Protein modification.protein folding and quality control.protein folding catalyst activities.FKBP protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00091.27 0.8749782779883057 62 AMTR_s00147p00070270 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor evm_27.TU.AmTr_v1.0_scaffold00147.32 0.8743844026323448 37 AMTR_s00052p00141980 evm_27.TU.AmTr_v1.0_scaffold00052.44 0.8731865425760242 38 AMTR_s00012p00254470 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.276 0.8726732368320748 39 AMTR_s00119p00032590 evm_27.TU.AmTr_v1.0_scaffold00119.15 0.8718577129178918 40 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.8709460897204302 86 AMTR_s00007p00257360 Protein modification.phosphorylation.CMGC kinase superfamily.STN kinase evm_27.TU.AmTr_v1.0_scaffold00007.307 0.8708069010975541 42 AMTR_s00061p00059490 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa3-type component evm_27.TU.AmTr_v1.0_scaffold00061.34 0.8706185811700116 83 AMTR_s00007p00193800 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaK evm_27.TU.AmTr_v1.0_scaffold00007.164 0.8703786024640555 57 AMTR_s00049p00220580 evm_27.TU.AmTr_v1.0_scaffold00049.257 0.8683296708229273 45 AMTR_s00053p00027630 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase evm_27.TU.AmTr_v1.0_scaffold00053.10 0.8659205299078381 46 AMTR_s00135p00104240 Solute transport.carrier-mediated transport.DMT superfamily.PUP organic cation transporter evm_27.TU.AmTr_v1.0_scaffold00135.60 0.8656127241967504 47 AMTR_s00073p00093410 Secondary metabolism.phenolics.flavonoid synthesis and modification.flavons and flavonols.flavonol synthase evm_27.TU.AmTr_v1.0_scaffold00073.24 0.8652004385821166 48 AMTR_s00017p00225060 Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00017.174 0.8651326556082626 49 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00166.36 0.8644344037173123 58 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8634862299870133 51 AMTR_s00025p00232880 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF173 protein evm_27.TU.AmTr_v1.0_scaffold00025.342 0.8628832913120226 52 AMTR_s00092p00167540 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond evm_27.TU.AmTr_v1.0_scaffold00092.149 0.8623310303077102 82 AMTR_s00357p00011320 evm_27.TU.AmTr_v1.0_scaffold00357.3 0.8623054648972676 54 AMTR_s00037p00234060 Photosynthesis.photorespiration.glycine cleavage system.T-protein aminomethyltransferase component evm_27.TU.AmTr_v1.0_scaffold00037.152 0.8622966505005525 57 AMTR_s00046p00093500 Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit b_ evm_27.TU.AmTr_v1.0_scaffold00046.51 0.8611821369260703 57 AMTR_s00067p00206610 evm_27.TU.AmTr_v1.0_scaffold00067.230 0.8607595124378525 57 AMTR_s00078p00063510 Photosynthesis.calvin cycle.phosphopentose epimerase evm_27.TU.AmTr_v1.0_scaffold00078.34 0.860299363495193 66 AMTR_s00007p00216080 evm_27.TU.AmTr_v1.0_scaffold00007.201 0.8597853284846062 59 AMTR_s00001p00262360 evm_27.TU.AmTr_v1.0_scaffold00001.385 0.8592459279414458 60 AMTR_s00001p00104540 evm_27.TU.AmTr_v1.0_scaffold00001.71 0.8588232203877737 61 AMTR_s00030p00231690 evm_27.TU.AmTr_v1.0_scaffold00030.187 0.8585981619181637 70 AMTR_s00003p00254020 evm_27.TU.AmTr_v1.0_scaffold00003.309 0.8583093649720779 63 AMTR_s00049p00073250 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HHL1 protein evm_27.TU.AmTr_v1.0_scaffold00049.46 0.8579851482405055 64 AMTR_s00171p00037370 Redox homeostasis.chloroplast redox homeostasis.ferredoxin-dependent thioredoxin reductase (FTR) complex.alpha subunit evm_27.TU.AmTr_v1.0_scaffold00171.14 0.8570681344982377 65 AMTR_s00049p00220880 evm_27.TU.AmTr_v1.0_scaffold00049.258 0.855694623821815 66 AMTR_s00062p00151050 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00062.139 0.8556474072845547 67 AMTR_s00025p00231150 evm_27.TU.AmTr_v1.0_scaffold00025.335 0.8547582395577725 68 AMTR_s00096p00114120 Carbohydrate metabolism.raffinose family oligosaccharide biosynthesis.galactinol synthase evm_27.TU.AmTr_v1.0_scaffold00096.70 0.854320037207503 69 AMTR_s00090p00154050 Redox homeostasis.chloroplast redox homeostasis.ferredoxin-dependent thioredoxin reductase (FTR) complex.beta subunit evm_27.TU.AmTr_v1.0_scaffold00090.85 0.8542283360862445 70 AMTR_s00039p00159460 evm_27.TU.AmTr_v1.0_scaffold00039.112 0.8519929661233588 71 AMTR_s00012p00044890 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00012.9 0.850752487384504 72 AMTR_s00025p00112220 Endo-1,3;1,4-beta-D-glucanase OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00025.100 0.85071345262509 73 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase evm_27.TU.AmTr_v1.0_scaffold00029.342 0.8498637142127582 99 AMTR_s00011p00255760 Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.NCED carotenoid cleavage dioxygenase evm_27.TU.AmTr_v1.0_scaffold00011.172 0.8484244172012597 75 AMTR_s00181p00022280 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00181.8 0.8454657675438745 78 AMTR_s00009p00163120 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00009.90 0.8453619970681161 79 AMTR_s00059p00164750 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.BEL transcription factor evm_27.TU.AmTr_v1.0_scaffold00059.154 0.8446242276462855 80 AMTR_s00067p00091510 Probable F-box protein At4g22030 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.68 0.8444254148737009 81 AMTR_s00009p00256550 Receptor-like protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.287 0.8429627866958025 83 AMTR_s00052p00143130 evm_27.TU.AmTr_v1.0_scaffold00052.47 0.842737321153827 84 AMTR_s00059p00076320 evm_27.TU.AmTr_v1.0_scaffold00059.51 0.8418100917895142 85 AMTR_s00057p00220810 evm_27.TU.AmTr_v1.0_scaffold00057.287 0.8413043300242498 87 AMTR_s00058p00152490 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.phosphorylation/dephosphorylation.PPH1/TAP38 phosphatase evm_27.TU.AmTr_v1.0_scaffold00058.124 0.840861876676783 88 AMTR_s00058p00191040 Carbonic anhydrase, chloroplastic OS=Spinacia oleracea evm_27.TU.AmTr_v1.0_scaffold00058.190 0.8408057798415091 89 AMTR_s00053p00093890 Amino acid metabolism.biosynthesis.aspartate family.asparagine.asparagine aminotransaminase evm_27.TU.AmTr_v1.0_scaffold00053.49 0.8405197619449682 90 AMTR_s00056p00227590 Phytohormones.abscisic acid.perception and signalling.PYR/PYL-receptor.cytoplasm-localized receptor complex.PYL/RCAR-type receptor component evm_27.TU.AmTr_v1.0_scaffold00056.231 0.8374462873858406 93 AMTR_s00017p00249180 evm_27.TU.AmTr_v1.0_scaffold00017.248 0.8367012861330524 94 AMTR_s00033p00166660 evm_27.TU.AmTr_v1.0_scaffold00033.112 0.8359410881496218 95 AMTR_s00061p00163970 evm_27.TU.AmTr_v1.0_scaffold00061.161 0.8355398985606992 96 AMTR_s00008p00068860 Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00008.23 0.8353070625282549 97 AMTR_s00083p00167810 Peroxidase 15 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00083.44 0.8341476748491629 99 AMTR_s00048p00195780 Solute transport.carrier-mediated transport.APC superfamily.DUR proton:urea symporter evm_27.TU.AmTr_v1.0_scaffold00048.159 0.8315645947849172 100