Sequence Description Alias PCC hrr AMTR_s00045p00068210 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component evm_27.TU.AmTr_v1.0_scaffold00045.55 0.9621004026651 5 AMTR_s00023p00062480 Protein modification.acetylation.NatB-type N-terminal acetylase complex.NAA25 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00023.28 0.9577702817783872 6 AMTR_s00110p00037960 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00110.12 0.9577148365533502 10 AMTR_s00137p00063430 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00137.24 0.9566845739233112 4 AMTR_s00066p00191280 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF-QO electron transfer flavoprotein-ubiquinone oxidoreductase evm_27.TU.AmTr_v1.0_scaffold00066.244 0.95480426936445 5 AMTR_s00175p00051190 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00175.23 0.9545099400769963 6 AMTR_s00119p00089670 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC6-type golgin evm_27.TU.AmTr_v1.0_scaffold00119.69 0.9543047028325269 7 AMTR_s00020p00038010 Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00020.9 0.9541906643245216 11 AMTR_s00025p00200390 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase evm_27.TU.AmTr_v1.0_scaffold00025.254 0.952776069003124 10 AMTR_s00083p00130670 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase evm_27.TU.AmTr_v1.0_scaffold00083.35 0.9522694992055937 15 AMTR_s00044p00068470 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.zinc cation transporter (Zn-CDF-type) evm_27.TU.AmTr_v1.0_scaffold00044.39 0.950243699665121 11 AMTR_s00092p00157140 evm_27.TU.AmTr_v1.0_scaffold00092.133 0.9498896840162686 12 AMTR_s00026p00019230 DNA repair protein UVH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00026.2 0.9491718956665114 13 AMTR_s00179p00033790 evm_27.TU.AmTr_v1.0_scaffold00179.7 0.948684077331143 14 AMTR_s00009p00251110 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.2 protease evm_27.TU.AmTr_v1.0_scaffold00009.258 0.9468985035962187 15 AMTR_s00081p00160620 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.head module.MED17 component evm_27.TU.AmTr_v1.0_scaffold00081.69 0.9464631507971271 16 AMTR_s00101p00084550 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF77/Rna14 component evm_27.TU.AmTr_v1.0_scaffold00101.61 0.945280060858568 17 AMTR_s00003p00052150 evm_27.TU.AmTr_v1.0_scaffold00003.32 0.945234263229972 18 AMTR_s00059p00178020 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC3 component evm_27.TU.AmTr_v1.0_scaffold00059.189 0.9446655785313761 24 AMTR_s00024p00229020 evm_27.TU.AmTr_v1.0_scaffold00024.234 0.9442516531335684 20 AMTR_s00004p00135010 Cold shock protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.130 0.9441125192342464 21 AMTR_s00106p00098180 evm_27.TU.AmTr_v1.0_scaffold00106.68 0.9436172906694781 22 AMTR_s00060p00196600 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED23 component evm_27.TU.AmTr_v1.0_scaffold00060.141 0.9430033477495074 23 AMTR_s00110p00053630 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin evm_27.TU.AmTr_v1.0_scaffold00110.24 0.9425703447697532 43 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9424583743316182 25 AMTR_s00055p00041510 Histidine kinase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.12 0.9423617550722582 26 AMTR_s00142p00102260 Protein modification.acetylation.NatA-type N-terminal acetylase complex.NAA15 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00142.67 0.9420131200794915 27 AMTR_s00061p00106080 evm_27.TU.AmTr_v1.0_scaffold00061.82 0.9418769938158585 28 AMTR_s00068p00178640 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS18 component evm_27.TU.AmTr_v1.0_scaffold00068.135 0.9417186943992419 29 AMTR_s00111p00067270 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00111.37 0.9414137685154327 30 AMTR_s00009p00265450 MLO-like protein 14 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.382 0.9411295770007411 31 AMTR_s00087p00144100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00087.47 0.9411114549315927 32 AMTR_s00085p00139780 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.MORC-type auxilary factor evm_27.TU.AmTr_v1.0_scaffold00085.89 0.9409598475588931 33 AMTR_s00029p00164810 evm_27.TU.AmTr_v1.0_scaffold00029.213 0.9405469716970158 34 AMTR_s00016p00180540 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component evm_27.TU.AmTr_v1.0_scaffold00016.142 0.9399699209183412 35 AMTR_s00092p00069380 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP5/TAC12 component evm_27.TU.AmTr_v1.0_scaffold00092.35 0.9396583317484098 36 AMTR_s00005p00116160 evm_27.TU.AmTr_v1.0_scaffold00005.31 0.9391419743631126 37 AMTR_s00071p00058700 CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00071.33 0.9390173072588808 38 AMTR_s00049p00011400 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.2 0.9384055011470926 39 AMTR_s00071p00185920 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00071.194 0.9383632846578384 40 AMTR_s00013p00247130 Protein modification.O-linked glycosylation.serine/threonine O-linked glycosylation.SEC N-acetylglucosamine transferase evm_27.TU.AmTr_v1.0_scaffold00013.214 0.9382896352895764 41 AMTR_s00036p00173790 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00036.85 0.9381773483841016 42 AMTR_s00025p00243690 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00025.377 0.9378036017773118 43 AMTR_s00024p00070750 evm_27.TU.AmTr_v1.0_scaffold00024.29 0.9377600075440335 44 AMTR_s00061p00213120 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor evm_27.TU.AmTr_v1.0_scaffold00061.265 0.9371208045022719 45 AMTR_s00048p00165310 Protein BCCIP homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.119 0.9363406083569126 46 AMTR_s00010p00086200 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component evm_27.TU.AmTr_v1.0_scaffold00010.48 0.9363387067471463 47 AMTR_s00077p00170260 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00077.187 0.9363082909445862 48 AMTR_s00109p00082150 Lipid metabolism.lipid degradation.fatty acid degradation.core beta-oxidation.MFP multifunctional enzyme evm_27.TU.AmTr_v1.0_scaffold00109.66 0.9363008636963736 49 AMTR_s00003p00202580 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00003.190 0.9360097010735317 50 AMTR_s00065p00048130 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.24 0.9359653619026762 51 AMTR_s00025p00221330 evm_27.TU.AmTr_v1.0_scaffold00025.310 0.935857506298478 52 AMTR_s00155p00036470 evm_27.TU.AmTr_v1.0_scaffold00155.17 0.9355640410994583 53 AMTR_s00090p00083520 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.29 0.9354070117884328 54 AMTR_s00072p00167120 Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.115 0.9351886365768407 55 AMTR_s00059p00170320 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX-type) evm_27.TU.AmTr_v1.0_scaffold00059.165 0.9349805042853818 56 AMTR_s00002p00271330 Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.622 0.9345186663642926 57 AMTR_s00059p00193620 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase evm_27.TU.AmTr_v1.0_scaffold00059.214 0.9343435513992736 58 AMTR_s00057p00150120 evm_27.TU.AmTr_v1.0_scaffold00057.136 0.9341539818255886 59 AMTR_s00002p00270610 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPM/PP2C Mn/Mg-dependent phosphatase families.clade J phosphatase evm_27.TU.AmTr_v1.0_scaffold00002.591 0.9337377256848057 60 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9335959304423548 61 AMTR_s00002p00267140 Protein modification.protein folding and quality control.N-glycan-dependent machinery.MNL alpha-1,2 exomannosidase evm_27.TU.AmTr_v1.0_scaffold00002.520 0.9333612707383636 62 AMTR_s00110p00155630 evm_27.TU.AmTr_v1.0_scaffold00110.131 0.93334580567 63 AMTR_s00025p00060820 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB activating E1 complex.large component (ECR1) evm_27.TU.AmTr_v1.0_scaffold00025.39 0.9331991846336776 64 AMTR_s00010p00044630 Protein SWEETIE OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.22 0.9326102652038113 65 AMTR_s00040p00179700 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00040.171 0.9325314532639025 66 AMTR_s00146p00080830 RNA biosynthesis.transcriptional activation.PHD finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00146.48 0.9320294295092723 67 AMTR_s00025p00208510 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN13 regulatory component evm_27.TU.AmTr_v1.0_scaffold00025.272 0.9319820860642769 68 AMTR_s00050p00215890 evm_27.TU.AmTr_v1.0_scaffold00050.82 0.9318383764215359 69 AMTR_s00039p00226980 evm_27.TU.AmTr_v1.0_scaffold00039.208 0.9315574883811315 70 AMTR_s00090p00135570 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF6 component evm_27.TU.AmTr_v1.0_scaffold00090.68 0.9310453582394528 71 AMTR_s00036p00195200 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase complex.beta subunit evm_27.TU.AmTr_v1.0_scaffold00036.108 0.9306377984388097 72 AMTR_s00025p00188170 RNA processing.RNA splicing.U12-type-intron-specific minor spliceosome.U11 small nuclear ribonucleoprotein particle (snRNP).U11-59K snRNP component evm_27.TU.AmTr_v1.0_scaffold00025.229 0.9305357378028636 73 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9305331389883169 74 AMTR_s00009p00268760 Multi-process regulation.circadian clock.TOC1 evening oscillator component evm_27.TU.AmTr_v1.0_scaffold00009.431 0.9305054714811805 75 AMTR_s00059p00208660 evm_27.TU.AmTr_v1.0_scaffold00059.241 0.9304163969802692 76 AMTR_s00019p00236090 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component evm_27.TU.AmTr_v1.0_scaffold00019.329 0.929773444615325 77 AMTR_s00002p00269010 evm_27.TU.AmTr_v1.0_scaffold00002.545 0.929601015980253 78 AMTR_s00058p00177950 evm_27.TU.AmTr_v1.0_scaffold00058.168 0.9287429872530769 79 AMTR_s00055p00187070 Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.116 0.928299627182342 80 AMTR_s00025p00149970 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component evm_27.TU.AmTr_v1.0_scaffold00025.169 0.9282773869817734 81 AMTR_s00101p00067890 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.ACINUS component evm_27.TU.AmTr_v1.0_scaffold00101.41 0.9280358012591441 82 AMTR_s00045p00163960 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.RPAP3 polymerase- II regulator protein evm_27.TU.AmTr_v1.0_scaffold00045.188 0.9280179207159059 83 AMTR_s00037p00181430 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB activating E1 complex.small component (AXR1/AXL) evm_27.TU.AmTr_v1.0_scaffold00037.87 0.9275352979702071 84 AMTR_s00003p00101050 evm_27.TU.AmTr_v1.0_scaffold00003.65 0.9268815106766876 85 AMTR_s00002p00118630 evm_27.TU.AmTr_v1.0_scaffold00002.74 0.9267661533195004 86 AMTR_s00002p00199670 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF4 component evm_27.TU.AmTr_v1.0_scaffold00002.188 0.9265201206557258 87 AMTR_s00138p00029150 evm_27.TU.AmTr_v1.0_scaffold00138.10 0.9264848003038835 88 AMTR_s00049p00191680 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).transmembrane ring.GP210 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00049.202 0.9263120209700745 89 AMTR_s00170p00030060 Protein modification.phosphorylation.TKL kinase superfamily.LRR-II kinase evm_27.TU.AmTr_v1.0_scaffold00170.10 0.9261654262292389 90 AMTR_s00021p00172560 Apoptosis inhibitor 5-like protein API5 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00021.126 0.9261131538880364 91 AMTR_s00009p00261910 Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.342 0.9260304047919137 92 AMTR_s00045p00203910 Chromatin organisation.histone modifications.histone arginine methylation.PRMT4 histone methylase evm_27.TU.AmTr_v1.0_scaffold00045.269 0.9258114328736776 93 AMTR_s00030p00083820 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00030.33 0.925799399628286 94 AMTR_s00049p00115800 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00049.91 0.9257374428691487 95 AMTR_s00027p00246570 Chaperone protein dnaJ GFA2, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00027.154 0.9257245986159135 96 AMTR_s00007p00224640 GTP-binding protein At2g22870 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.219 0.9256994333622074 97 AMTR_s00057p00185220 Probable serine/threonine-protein phosphatase 2A regulatory subunit B subunit TON2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00057.200 0.9256813521967212 98 AMTR_s00086p00165640 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00086.104 0.9254681483162503 99 AMTR_s00010p00241770 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial glucanotransferase evm_27.TU.AmTr_v1.0_scaffold00010.311 0.9254070433220416 100