Sequence Description Alias PCC hrr AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9579171230289337 1 AMTR_s00101p00084550 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF77/Rna14 component evm_27.TU.AmTr_v1.0_scaffold00101.61 0.9522724514169724 5 AMTR_s00081p00160620 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.head module.MED17 component evm_27.TU.AmTr_v1.0_scaffold00081.69 0.951230581233198 3 AMTR_s00025p00188170 RNA processing.RNA splicing.U12-type-intron-specific minor spliceosome.U11 small nuclear ribonucleoprotein particle (snRNP).U11-59K snRNP component evm_27.TU.AmTr_v1.0_scaffold00025.229 0.9494832003182788 4 AMTR_s00028p00193460 Phytohormones.cytokinin.perception and signal transduction.AHK-type receptor evm_27.TU.AmTr_v1.0_scaffold00028.85 0.9483511704415244 5 AMTR_s00110p00053630 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2 adherin evm_27.TU.AmTr_v1.0_scaffold00110.24 0.9478539001144065 23 AMTR_s00016p00180540 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component evm_27.TU.AmTr_v1.0_scaffold00016.142 0.9470635260383863 7 AMTR_s00045p00068210 RNA processing.RNA modification.rRNA/tRNA methylation.TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex.TRM734 component evm_27.TU.AmTr_v1.0_scaffold00045.55 0.9444609843501878 51 AMTR_s00037p00070040 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00037.19 0.9430033477495074 23 AMTR_s00175p00051190 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00175.23 0.9429942024822252 10 AMTR_s00036p00173790 Protein biosynthesis.aminoacyl-tRNA synthetase activities.isoleucine-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00036.85 0.9420524673984438 11 AMTR_s00058p00177950 evm_27.TU.AmTr_v1.0_scaffold00058.168 0.9411359139792553 25 AMTR_s00110p00037960 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SMARCAL1-like group.SMARCAL1 chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00110.12 0.9398490067330769 56 AMTR_s00069p00066350 Protein unc-13 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00069.40 0.9396905891766846 16 AMTR_s00119p00089670 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC6-type golgin evm_27.TU.AmTr_v1.0_scaffold00119.69 0.9370976639707791 15 AMTR_s00148p00040560 evm_27.TU.AmTr_v1.0_scaffold00148.20 0.9369940238861751 16 AMTR_s00110p00146400 DExH-box ATP-dependent RNA helicase DExH14 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00110.121 0.936712238341605 17 AMTR_s00013p00056780 evm_27.TU.AmTr_v1.0_scaffold00013.20 0.9366125844224208 18 AMTR_s00060p00033670 Multi-process regulation.TOR signalling pathway.TORC complex.TOR kinase component evm_27.TU.AmTr_v1.0_scaffold00060.9 0.936318865778723 19 AMTR_s00013p00247130 Protein modification.O-linked glycosylation.serine/threonine O-linked glycosylation.SEC N-acetylglucosamine transferase evm_27.TU.AmTr_v1.0_scaffold00013.214 0.9341499208925015 31 AMTR_s00016p00255950 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor evm_27.TU.AmTr_v1.0_scaffold00016.338 0.9339681049299324 21 AMTR_s00142p00102260 Protein modification.acetylation.NatA-type N-terminal acetylase complex.NAA15 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00142.67 0.9333031494099386 62 AMTR_s00040p00210200 RNA processing.RNA 3-end polyadenylation.Cleavage Factor II (CF-IIm) complex.Pcf11 component evm_27.TU.AmTr_v1.0_scaffold00040.222 0.9329872221414955 23 AMTR_s00007p00201600 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.177 0.9323438347548149 24 AMTR_s00041p00141370 evm_27.TU.AmTr_v1.0_scaffold00041.101 0.9322389238664794 30 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9321056984343594 26 AMTR_s00082p00164590 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.Syndetin-like EARP-specific component evm_27.TU.AmTr_v1.0_scaffold00082.39 0.9319035571275028 27 AMTR_s00025p00149970 DNA damage response.DNA repair mechanisms.nonhomologous end-joining repair (NHEJ).LIG4-XRCC4 ligase complex.LIG4 DNA ligase component evm_27.TU.AmTr_v1.0_scaffold00025.169 0.9316080715171063 28 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9312095314699498 44 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9312005925697854 45 AMTR_s00003p00101050 evm_27.TU.AmTr_v1.0_scaffold00003.65 0.9308657002719931 31 AMTR_s00077p00108970 evm_27.TU.AmTr_v1.0_scaffold00077.94 0.9299318286397183 32 AMTR_s00023p00062480 Protein modification.acetylation.NatB-type N-terminal acetylase complex.NAA25 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00023.28 0.929858390106304 72 AMTR_s00001p00265330 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIh basal transcription factor complex.SSL2/XPB-type subunit evm_27.TU.AmTr_v1.0_scaffold00001.403 0.9295025070068628 34 AMTR_s00045p00076020 RNA biosynthesis.transcriptional activation.SBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00045.66 0.9293975427518707 35 AMTR_s00004p00267320 Vesicle trafficking.target membrane tethering.DSL1 (Depends-on-SLY1) complex.MIP2 component evm_27.TU.AmTr_v1.0_scaffold00004.268 0.9292419875094386 41 AMTR_s00003p00122400 Lipid metabolism.lipid degradation.fatty acid degradation.alternative beta-oxidation.monofunctionial hydroxyacyl-CoA dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00003.89 0.9267705145898473 37 AMTR_s00013p00152000 DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.78 0.9267231428185863 38 AMTR_s00010p00125180 Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00010.82 0.9265407500514383 39 AMTR_s00198p00028070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component evm_27.TU.AmTr_v1.0_scaffold00198.5 0.9264683387072553 40 AMTR_s00055p00196140 Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.133 0.9262246098099048 41 AMTR_s00007p00088050 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component evm_27.TU.AmTr_v1.0_scaffold00007.52 0.9258902049440629 42 AMTR_s00154p00021020 Protein RIK OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00154.5 0.9246957263615314 43 AMTR_s00077p00115750 Chromatin organisation.chromatin remodeling complexes.ATPase core components.SSO1653-like group.SHPRH chromatin remodeling factor evm_27.TU.AmTr_v1.0_scaffold00077.105 0.9246125074498442 84 AMTR_s00032p00225290 evm_27.TU.AmTr_v1.0_scaffold00032.241 0.9238233237065707 45 AMTR_s00030p00083820 Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii evm_27.TU.AmTr_v1.0_scaffold00030.33 0.9232406191780462 54 AMTR_s00022p00020890 evm_27.TU.AmTr_v1.0_scaffold00022.6 0.9229664355874986 47 AMTR_s00012p00217710 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component evm_27.TU.AmTr_v1.0_scaffold00012.161 0.9226076788644245 48 AMTR_s00268p00016240 Protein modification.phosphorylation.atypical kinase families.PIKK kinase evm_27.TU.AmTr_v1.0_scaffold00268.6 0.9225533022947603 49 AMTR_s00109p00082150 Lipid metabolism.lipid degradation.fatty acid degradation.core beta-oxidation.MFP multifunctional enzyme evm_27.TU.AmTr_v1.0_scaffold00109.66 0.9215970943117322 51 AMTR_s00092p00157140 evm_27.TU.AmTr_v1.0_scaffold00092.133 0.9212614386312948 85 AMTR_s00002p00267140 Protein modification.protein folding and quality control.N-glycan-dependent machinery.MNL alpha-1,2 exomannosidase evm_27.TU.AmTr_v1.0_scaffold00002.520 0.9209340792603935 55 AMTR_s00019p00236090 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component evm_27.TU.AmTr_v1.0_scaffold00019.329 0.920882916118575 56 AMTR_s00173p00060580 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00173.16 0.9208747274035722 57 AMTR_s00045p00168580 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class I/Ez histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00045.200 0.9205892498184348 58 AMTR_s00006p00149820 Cell cycle.interphase.DNA replication.preinitiation.origin recognition complex.ORC4 component evm_27.TU.AmTr_v1.0_scaffold00006.57 0.9200660782601504 60 AMTR_s00179p00033790 evm_27.TU.AmTr_v1.0_scaffold00179.7 0.9200542311449982 61 AMTR_s00016p00255310 Transportin MOS14 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00016.333 0.919635873379287 62 AMTR_s00002p00062890 evm_27.TU.AmTr_v1.0_scaffold00002.26 0.9193658463840361 63 AMTR_s00007p00267150 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP107 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00007.380 0.9191033298069766 69 AMTR_s00106p00133350 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component evm_27.TU.AmTr_v1.0_scaffold00106.104 0.9191014807218236 65 AMTR_s00010p00256430 evm_27.TU.AmTr_v1.0_scaffold00010.393 0.9188398427652651 66 AMTR_s02210p00008540 AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold02210.1 0.9183714000080916 67 AMTR_s00059p00138250 Vesicle trafficking.autophagosome formation.ATG8/ATG12 conjugation system.ATG7 ATG8/12-activating E1 protein evm_27.TU.AmTr_v1.0_scaffold00059.120 0.9182012257502604 68 AMTR_s00014p00253620 evm_27.TU.AmTr_v1.0_scaffold00014.137 0.9181722109653444 69 AMTR_s00009p00202570 Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.130 0.9181458213935787 70 AMTR_s00066p00129430 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS3 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00066.122 0.9175325194392058 71 AMTR_s00138p00029150 evm_27.TU.AmTr_v1.0_scaffold00138.10 0.9171402019511633 91 AMTR_s00004p00234640 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component evm_27.TU.AmTr_v1.0_scaffold00004.225 0.9170594858697448 73 AMTR_s00006p00266490 Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.289 0.9170456912774491 74 AMTR_s00029p00113670 RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIc transcription factor complex.TFC3 promotor-binding component evm_27.TU.AmTr_v1.0_scaffold00029.124 0.9165025210995255 77 AMTR_s00010p00086200 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF2 component evm_27.TU.AmTr_v1.0_scaffold00010.48 0.9164394251955236 77 AMTR_s00005p00116160 evm_27.TU.AmTr_v1.0_scaffold00005.31 0.9160668765369647 86 AMTR_s00110p00152340 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-II complex-specific components.TRS130/CLUB component evm_27.TU.AmTr_v1.0_scaffold00110.129 0.9160013894053969 79 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9158118698724805 80 AMTR_s00009p00267690 Protein modification.dephosphorylation.aspartate-based protein phosphatase superfamily.FCP phosphatase families.CPL1/2 phosphatase evm_27.TU.AmTr_v1.0_scaffold00009.409 0.9155696351242766 81 AMTR_s00147p00076810 Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF2B eIF2-GDP recycling complex.eIF2B-delta evm_27.TU.AmTr_v1.0_scaffold00147.36 0.9155648116232494 82 AMTR_s00066p00146980 Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase-activating protein (RAB-GAP) evm_27.TU.AmTr_v1.0_scaffold00066.149 0.9153462575126592 85 AMTR_s00036p00195200 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase complex.beta subunit evm_27.TU.AmTr_v1.0_scaffold00036.108 0.9153138350627598 86 AMTR_s00024p00229020 evm_27.TU.AmTr_v1.0_scaffold00024.234 0.9152987268130937 87 AMTR_s00003p00212560 evm_27.TU.AmTr_v1.0_scaffold00003.204 0.9150870734132734 88 AMTR_s00111p00150590 Cell wall.callose.callose synthase evm_27.TU.AmTr_v1.0_scaffold00111.135 0.9145136939086141 89 AMTR_s00046p00164820 Protein modification.acetylation.NatC-type N-terminal acetylase complex.NAA35 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00046.88 0.914397019592509 90 AMTR_s00061p00131900 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component evm_27.TU.AmTr_v1.0_scaffold00061.110 0.9142686700400258 92 AMTR_s00491p00000370 5-3 exoribonuclease 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00491.1 0.9141893913066791 93 AMTR_s00009p00261910 Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.342 0.9141050171468931 94 AMTR_s00009p00067490 Pumilio homolog 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00009.20 0.9136625321569002 96 AMTR_s00077p00193670 Cell cycle.cytokinesis.preprophase microtubule organization.MOR1 microtubule-associated protein evm_27.TU.AmTr_v1.0_scaffold00077.237 0.9135039550092675 97 AMTR_s00004p00140970 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.137 0.9134671045223262 98 AMTR_s00100p00112150 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS8 CORVET-specific component evm_27.TU.AmTr_v1.0_scaffold00100.35 0.9133106148695413 99 AMTR_s00025p00243690 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00025.377 0.9130515794937758 100