Sequence Description Alias PCC hrr AMTR_s00059p00067090 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component evm_27.TU.AmTr_v1.0_scaffold00059.43 0.957212309818352 1 AMTR_s00004p00169140 Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.189 0.9463770906284735 2 AMTR_s00002p00251130 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.KTF1/SPT5L auxilary silencing factor evm_27.TU.AmTr_v1.0_scaffold00002.356 0.9445714636869007 3 AMTR_s00012p00215820 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP62 nucleoporin evm_27.TU.AmTr_v1.0_scaffold00012.160 0.9426081743848731 4 AMTR_s00066p00038130 evm_27.TU.AmTr_v1.0_scaffold00066.14 0.939359888646998 6 AMTR_s00029p00107550 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF15 component evm_27.TU.AmTr_v1.0_scaffold00029.110 0.9226434005323154 6 AMTR_s00025p00023010 5-3 exoribonuclease 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.4 0.9181001955090967 7 AMTR_s00064p00195070 Chaperonin CPN60-1, mitochondrial OS=Zea mays evm_27.TU.AmTr_v1.0_scaffold00064.92 0.9122924402233106 8 AMTR_s00078p00114350 Cold shock domain-containing protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00078.87 0.9081471445080675 25 AMTR_s00031p00165100 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00031.70 0.90791824319041 12 AMTR_s00071p00151200 evm_27.TU.AmTr_v1.0_scaffold00071.137 0.9058338540771986 11 AMTR_s00154p00024620 RNA processing.organelle machineries.RNA editing.ORRM-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00154.7 0.9051673972895021 19 AMTR_s00010p00229790 0.9041055143671518 37 AMTR_s00039p00032460 External stimuli response.light.red/far red light.PIF transcriptional regulator evm_27.TU.AmTr_v1.0_scaffold00039.9 0.9011210151397985 14 AMTR_s03998p00000890 evm_27.TU.AmTr_v1.0_scaffold03998.1 0.900367657355774 25 AMTR_s00011p00195950 Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00011.62 0.8986034038016433 16 AMTR_s00017p00236990 evm_27.TU.AmTr_v1.0_scaffold00017.198 0.8983618781466367 17 AMTR_s00021p00248250 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A3 component evm_27.TU.AmTr_v1.0_scaffold00021.274 0.8974247996609412 18 AMTR_s00029p00190880 evm_27.TU.AmTr_v1.0_scaffold00029.258 0.8949625303265952 25 AMTR_s00029p00248960 evm_27.TU.AmTr_v1.0_scaffold00029.452 0.892567667274558 20 AMTR_s00028p00236770 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00028.123 0.8925587974537463 21 AMTR_s00009p00233340 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00009.189 0.8866826615841185 22 AMTR_s00047p00202290 evm_27.TU.AmTr_v1.0_scaffold00047.131 0.8848452572993232 28 AMTR_s00169p00047130 evm_27.TU.AmTr_v1.0_scaffold00169.29 0.8819247372511333 24 AMTR_s00060p00188740 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00060.125 0.8813229338142993 78 AMTR_s00153p00073330 Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00153.37 0.8811697887851316 26 AMTR_s00043p00232110 evm_27.TU.AmTr_v1.0_scaffold00043.89 0.8796411135692743 27 AMTR_s00099p00155940 RNA biosynthesis.transcriptional activation.Alfin-like transcription factor evm_27.TU.AmTr_v1.0_scaffold00099.152 0.8787286836489046 38 AMTR_s00046p00168380 Flowering time control protein FCA OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00046.92 0.8786450648772124 69 AMTR_s00040p00217700 evm_27.TU.AmTr_v1.0_scaffold00040.234 0.8785666914820753 30 AMTR_s00047p00118220 evm_27.TU.AmTr_v1.0_scaffold00047.47 0.8775729499049602 31 AMTR_s00015p00214470 COP1-interactive protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00015.64 0.8754513178702326 32 AMTR_s00059p00078950 Acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.55 0.8739297623140992 33 AMTR_s00015p00162660 evm_27.TU.AmTr_v1.0_scaffold00015.32 0.8721405236948675 54 AMTR_s00049p00181100 RNA biosynthesis.transcriptional activation.JUMONJI transcription factor evm_27.TU.AmTr_v1.0_scaffold00049.175 0.872103848800057 75 AMTR_s00099p00056810 evm_27.TU.AmTr_v1.0_scaffold00099.39 0.8713931173928559 51 AMTR_s00008p00241640 Protein modification.phosphorylation.TKL kinase superfamily.PERK kinase evm_27.TU.AmTr_v1.0_scaffold00008.168 0.8709496626562041 88 AMTR_s00160p00078150 evm_27.TU.AmTr_v1.0_scaffold00160.29 0.8702996545755745 38 AMTR_s00025p00176430 Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.212 0.8673354195853161 39 AMTR_s00036p00235910 evm_27.TU.AmTr_v1.0_scaffold00036.181 0.8669082797408453 68 AMTR_s00037p00104930 evm_27.TU.AmTr_v1.0_scaffold00037.40 0.8656871668381059 42 AMTR_s00001p00270600 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia evm_27.TU.AmTr_v1.0_scaffold00001.466 0.8651969481153874 43 AMTR_s00013p00244720 RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum evm_27.TU.AmTr_v1.0_scaffold00013.205 0.8649056203627836 44 AMTR_s00018p00254940 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00018.167 0.8648626176787532 89 AMTR_s00021p00241150 evm_27.TU.AmTr_v1.0_scaffold00021.251 0.863082501210276 55 AMTR_s00079p00038550 Cell wall.hemicellulose.xyloglucan.modification and degradation.1,6-alpha-xylosidase evm_27.TU.AmTr_v1.0_scaffold00079.11 0.8629331683854643 63 AMTR_s00062p00211520 RNA biosynthesis.transcriptional activation.SBP transcription factor evm_27.TU.AmTr_v1.0_scaffold00062.234 0.8627098803170429 49 AMTR_s00049p00200350 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.212 0.8617922018206954 50 AMTR_s00058p00212160 Multi-process regulation.Rop GTPase regulatory system.RIP GTPase interactive protein evm_27.TU.AmTr_v1.0_scaffold00058.225 0.8617515379635244 83 AMTR_s00051p00133340 Protein modification.phosphorylation.TKL kinase superfamily.LRR-III kinase evm_27.TU.AmTr_v1.0_scaffold00051.52 0.8606016005697245 86 AMTR_s00007p00111990 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF7 component evm_27.TU.AmTr_v1.0_scaffold00007.67 0.8597497617607192 53 AMTR_s00101p00124120 Tetraspanin-2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00101.98 0.8576926283909438 55 AMTR_s00025p00083640 Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00025.65 0.8573695499722735 56 AMTR_s00002p00165660 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase regulatory protein evm_27.TU.AmTr_v1.0_scaffold00002.139 0.8571686606538366 57 AMTR_s00030p00132070 Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.79 0.856098727084778 66 AMTR_s00032p00138740 evm_27.TU.AmTr_v1.0_scaffold00032.100 0.8547523407660192 59 AMTR_s00016p00253700 RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component evm_27.TU.AmTr_v1.0_scaffold00016.317 0.8547397950080756 60 AMTR_s00021p00234660 Protein degradation.peptidase families.aspartic-type peptidase activities.pepsin-type protease evm_27.TU.AmTr_v1.0_scaffold00021.234 0.8544519044234044 95 AMTR_s00006p00267030 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).RBM25 pre-mRNA splicing regulator evm_27.TU.AmTr_v1.0_scaffold00006.296 0.853746811260587 80 AMTR_s00062p00075830 evm_27.TU.AmTr_v1.0_scaffold00062.47 0.8513536862470215 63 AMTR_s02586p00005170 evm_27.TU.AmTr_v1.0_scaffold02586.1 0.8513405236554416 64 AMTR_s00063p00034480 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Pfs2/FY component evm_27.TU.AmTr_v1.0_scaffold00063.6 0.8511761074946388 94 AMTR_s00130p00083610 evm_27.TU.AmTr_v1.0_scaffold00130.39 0.8494758054203639 67 AMTR_s00066p00033210 evm_27.TU.AmTr_v1.0_scaffold00066.9 0.8483393868443511 68 AMTR_s00013p00226180 UPF0235 protein At5g63440 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00013.170 0.8479220349664703 69 AMTR_s00003p00181560 Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00003.158 0.8456588242021287 71 AMTR_s00012p00236230 evm_27.TU.AmTr_v1.0_scaffold00012.198 0.8454811414103831 72 AMTR_s00047p00127280 evm_27.TU.AmTr_v1.0_scaffold00047.51 0.844034891887373 75 AMTR_s00044p00233260 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor evm_27.TU.AmTr_v1.0_scaffold00044.255 0.8430498893811497 77 AMTR_s00011p00238390 evm_27.TU.AmTr_v1.0_scaffold00011.131 0.8413187860258584 81 AMTR_s00068p00041900 evm_27.TU.AmTr_v1.0_scaffold00068.14 0.8401446815701904 82 AMTR_s00092p00135160 SART-1 family protein DOT2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00092.101 0.8386197793343576 84 AMTR_s00045p00044950 evm_27.TU.AmTr_v1.0_scaffold00045.23 0.8369687015225399 85 AMTR_s00111p00086580 Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL15 component evm_27.TU.AmTr_v1.0_scaffold00111.57 0.8355479871356564 87 AMTR_s00108p00087870 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00108.11 0.8310156046599448 96 AMTR_s00156p00041430 evm_27.TU.AmTr_v1.0_scaffold00156.18 0.8281240983119939 99