Sequence Description Alias PCC hrr AMTR_s00011p00258380 RNA biosynthesis.organelle machineries.transcription.Sigma-type basal transcription factor evm_27.TU.AmTr_v1.0_scaffold00011.182 0.9371650114218776 1 AMTR_s00109p00129480 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Ts elongation factor evm_27.TU.AmTr_v1.0_scaffold00109.135 0.9274464416308671 9 AMTR_s00003p00168720 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.RH3 basal splicing factor evm_27.TU.AmTr_v1.0_scaffold00003.145 0.9272103602459569 22 AMTR_s00036p00109340 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component evm_27.TU.AmTr_v1.0_scaffold00036.44 0.9265467607772192 4 AMTR_s00043p00203580 RNA processing.organelle machineries.RNA editing.MORF-type RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00043.64 0.9247976368502653 10 AMTR_s00021p00200120 evm_27.TU.AmTr_v1.0_scaffold00021.166 0.9247808691628173 6 AMTR_s00006p00263760 Disease resistance protein RPM1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.255 0.9206633983197215 7 AMTR_s00012p00154880 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.ALB3 component evm_27.TU.AmTr_v1.0_scaffold00012.92 0.9196543166710592 32 AMTR_s00029p00221060 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL4 component evm_27.TU.AmTr_v1.0_scaffold00029.338 0.9151954193032982 25 AMTR_s00004p00079400 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor NDF5 evm_27.TU.AmTr_v1.0_scaffold00004.63 0.9128006512921848 32 AMTR_s00003p00105430 Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase evm_27.TU.AmTr_v1.0_scaffold00003.71 0.9112407653371382 11 AMTR_s00025p00151950 RNA biosynthesis.transcriptional activation.MYB superfamily.G2-like GARP transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.171 0.9106834482970481 12 AMTR_s00061p00032260 RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.6 0.9066337275709959 27 AMTR_s00002p00265220 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor evm_27.TU.AmTr_v1.0_scaffold00002.494 0.9047726936864762 18 AMTR_s00122p00139490 Root phototropism protein 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00122.75 0.9032095390795655 15 AMTR_s00007p00097240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP2/TAC2 component evm_27.TU.AmTr_v1.0_scaffold00007.57 0.9019393159573519 16 AMTR_s00008p00109510 Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00008.45 0.8990469561693041 40 AMTR_s00149p00031690 Protein biosynthesis.organelle translation machineries.translation elongation.EF-G elongation factor evm_27.TU.AmTr_v1.0_scaffold00149.10 0.8983143955733679 18 AMTR_s00016p00073950 evm_27.TU.AmTr_v1.0_scaffold00016.37 0.8967406938552478 36 AMTR_s00071p00185160 evm_27.TU.AmTr_v1.0_scaffold00071.193 0.8966551098325682 20 AMTR_s00137p00042790 Protein biosynthesis.organelle translation machineries.translation initiation.IF-3 initiation factor evm_27.TU.AmTr_v1.0_scaffold00137.14 0.8965759503255597 39 AMTR_s00025p00237880 evm_27.TU.AmTr_v1.0_scaffold00025.357 0.8961857075349556 28 AMTR_s00053p00152680 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.CHL-D component evm_27.TU.AmTr_v1.0_scaffold00053.100 0.8932881576933331 42 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.891452767940076 78 AMTR_s00021p00158020 RNA biosynthesis.transcriptional activation.TCP transcription factor evm_27.TU.AmTr_v1.0_scaffold00021.111 0.889394082065245 25 AMTR_s00054p00125650 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL21 component evm_27.TU.AmTr_v1.0_scaffold00054.40 0.8892559031358632 48 AMTR_s00053p00151810 Enzyme classification.EC_6 ligases.EC_6.6 ligase forming nitrogen-metal bond evm_27.TU.AmTr_v1.0_scaffold00053.99 0.8881960148103341 27 AMTR_s00026p00112660 Nucleotide metabolism.purines.phosphotransfers.adenylate kinase evm_27.TU.AmTr_v1.0_scaffold00026.52 0.8873527722481973 76 AMTR_s00025p00231300 evm_27.TU.AmTr_v1.0_scaffold00025.336 0.8864925305892496 29 AMTR_s00049p00052690 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.magnesium-chelatase complex.GUN4 cofactor evm_27.TU.AmTr_v1.0_scaffold00049.26 0.8859682935235874 46 AMTR_s00054p00095350 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase evm_27.TU.AmTr_v1.0_scaffold00054.32 0.8857639617786667 89 AMTR_s00016p00251680 Photosynthesis.calvin cycle.glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00016.302 0.8841294038592202 74 AMTR_s00039p00160690 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb28 protein evm_27.TU.AmTr_v1.0_scaffold00039.114 0.8836871102477679 46 AMTR_s00017p00154940 Photosynthesis.photophosphorylation.photosystem II.photoprotection.non-photochemical quenching (NPQ).PsbS-dependent machinery.PsbS protein evm_27.TU.AmTr_v1.0_scaffold00017.71 0.8833523260693785 34 AMTR_s00109p00045690 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.32 0.8828425953530394 92 AMTR_s00027p00044970 evm_27.TU.AmTr_v1.0_scaffold00027.5 0.8818653689014986 36 AMTR_s00004p00178250 Protein modification.phosphorylation.atypical kinase families.ABC1 kinase evm_27.TU.AmTr_v1.0_scaffold00004.203 0.8816218750441935 85 AMTR_s00092p00096920 Protein biosynthesis.organelle translation machineries.translation initiation.IF-2 initiation factor evm_27.TU.AmTr_v1.0_scaffold00092.54 0.8801500999426061 41 AMTR_s00005p00203240 RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP3/TAC10 component evm_27.TU.AmTr_v1.0_scaffold00005.80 0.8781627949533588 42 AMTR_s00010p00262670 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll(ide) interconversions.geranylgeranyl reductase ChlP evm_27.TU.AmTr_v1.0_scaffold00010.474 0.8777575183943163 43 AMTR_s00147p00070270 Cytoskeleton.cp-actin-dependent plastid movement.CHUP motility factor evm_27.TU.AmTr_v1.0_scaffold00147.32 0.8777491691142473 44 AMTR_s00029p00223030 Lipid metabolism.galactolipid and sulfolipid synthesis.UDP-sulfoquinovose:DAG sulfoquinovosyltransferase evm_27.TU.AmTr_v1.0_scaffold00029.342 0.8761491553583838 51 AMTR_s00077p00179590 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX monomethylester cyclase complex.LCAA scaffolding component evm_27.TU.AmTr_v1.0_scaffold00077.201 0.8760597188422397 71 AMTR_s00160p00027870 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS5 component evm_27.TU.AmTr_v1.0_scaffold00160.6 0.8759735384855082 47 AMTR_s00010p00259490 Coenzyme metabolism.thiamine pyrophosphate synthesis.hydroxymethylpyrimidine diphosphate synthesis.hydroxymethylpyrimidine phosphate synthase (ThiC) evm_27.TU.AmTr_v1.0_scaffold00010.423 0.8755083008725723 82 AMTR_s00106p00108310 Protein degradation.peptidase families.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.FtsH1/2/5/6/8 component evm_27.TU.AmTr_v1.0_scaffold00106.79 0.8751467813447948 93 AMTR_s00065p00129700 Enzyme classification.EC_2 transferases.EC_2.3 acyltransferase evm_27.TU.AmTr_v1.0_scaffold00065.84 0.8716684395330151 52 AMTR_s00064p00107710 RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor evm_27.TU.AmTr_v1.0_scaffold00064.40 0.8702075013494203 53 AMTR_s00013p00039290 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL27 component evm_27.TU.AmTr_v1.0_scaffold00013.7 0.8700311787801078 57 AMTR_s00135p00058090 Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00135.24 0.8682325202185207 56 AMTR_s00016p00126140 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.FBX component evm_27.TU.AmTr_v1.0_scaffold00016.85 0.8681449290371536 57 AMTR_s00176p00057350 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase evm_27.TU.AmTr_v1.0_scaffold00176.30 0.8676280455405418 75 AMTR_s00018p00243310 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00018.150 0.8675911808801112 82 AMTR_s00010p00268080 evm_27.TU.AmTr_v1.0_scaffold00010.548 0.8668418105524417 60 AMTR_s00032p00227150 Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor evm_27.TU.AmTr_v1.0_scaffold00032.244 0.8659907266889562 64 AMTR_s00016p00164160 External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein evm_27.TU.AmTr_v1.0_scaffold00016.120 0.8658839086692598 65 AMTR_s00024p00186840 RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00024.151 0.8641670786167908 67 AMTR_s00071p00016000 Redox homeostasis.chloroplast redox homeostasis.M-type thioredoxin evm_27.TU.AmTr_v1.0_scaffold00071.5 0.8639880343308999 95 AMTR_s00041p00199430 evm_27.TU.AmTr_v1.0_scaffold00041.178 0.863683718958862 69 AMTR_s00036p00227270 Cell wall.lignin.monolignol synthesis.caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT) evm_27.TU.AmTr_v1.0_scaffold00036.168 0.8635456314313015 70 AMTR_s00062p00201460 External stimuli response.drought.stomatal closure signalling.CAS calcium sensor evm_27.TU.AmTr_v1.0_scaffold00062.212 0.8624657443424508 89 AMTR_s00126p00110160 RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase evm_27.TU.AmTr_v1.0_scaffold00126.53 0.8615397910189686 76 AMTR_s00065p00210500 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.subcomplex B.PnsB1/NDF1 component evm_27.TU.AmTr_v1.0_scaffold00065.208 0.8606386809514013 86 AMTR_s00016p00227430 Multi-process regulation.circadian clock.morning element regulation.TCP20 activation factor evm_27.TU.AmTr_v1.0_scaffold00016.212 0.8602261761870552 81 AMTR_s00063p00211490 evm_27.TU.AmTr_v1.0_scaffold00063.90 0.8589899754166959 82 AMTR_s00028p00227970 Photosynthesis.photophosphorylation.cytochrome b6/f complex.assembly.CCB cytochrome b6 maturation system (system IV).CCB4 component evm_27.TU.AmTr_v1.0_scaffold00028.110 0.8577530610859784 100 AMTR_s00022p00205270 Phytohormones.jasmonic acid.synthesis.13-lipoxygenase evm_27.TU.AmTr_v1.0_scaffold00022.242 0.8575877761488391 86 AMTR_s00012p00140520 DELLA protein GAI1 OS=Vitis vinifera evm_27.TU.AmTr_v1.0_scaffold00012.79 0.8575545579102735 87 AMTR_s00145p00064330 Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond evm_27.TU.AmTr_v1.0_scaffold00145.20 0.8573115346133954 88 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) evm_27.TU.AmTr_v1.0_scaffold00005.125 0.8566679475643505 89 AMTR_s00100p00087410 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris evm_27.TU.AmTr_v1.0_scaffold00100.26 0.8554952868899501 91 AMTR_s00024p00238310 YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.270 0.8550374014759401 92 AMTR_s00001p00173570 Protein modification.S-glutathionylation and deglutathionylation.glutathione S-transferase activities.class phi evm_27.TU.AmTr_v1.0_scaffold00001.162 0.8548845038043412 94 AMTR_s00089p00073940 evm_27.TU.AmTr_v1.0_scaffold00089.34 0.8543656913143309 95 AMTR_s00023p00218670 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL10 | mtRPL10 component evm_27.TU.AmTr_v1.0_scaffold00023.162 0.8541819478128782 96