Sequence Description Alias PCC hrr AMTR_s00001p00175920 Secondary metabolism.terpenoids.methylerythritol phosphate pathway.geranylgeranyl pyrophosphate synthase evm_27.TU.AmTr_v1.0_scaffold00001.167 0.9504175391041852 1 AMTR_s00096p00137440 Redox homeostasis.hydrogen peroxide removal.ascorbate-glutathione cycle.monodehydroascorbate reductase (MDAR) evm_27.TU.AmTr_v1.0_scaffold00096.88 0.928212839724504 2 AMTR_s00001p00147850 Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.130 0.9276863857347238 3 AMTR_s00103p00041210 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaD evm_27.TU.AmTr_v1.0_scaffold00103.18 0.925379048129723 22 AMTR_s00001p00269430 Probable carboxylesterase 8 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00001.439 0.9191334288592998 10 AMTR_s00045p00175560 Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00045.209 0.9162199280603283 6 AMTR_s00061p00065790 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaG evm_27.TU.AmTr_v1.0_scaffold00061.40 0.9147366198861175 30 AMTR_s00016p00088520 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein evm_27.TU.AmTr_v1.0_scaffold00016.50 0.9144516262217156 8 AMTR_s00029p00239610 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb4-type component evm_27.TU.AmTr_v1.0_scaffold00029.405 0.9120488649030506 44 AMTR_s00002p00271180 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase evm_27.TU.AmTr_v1.0_scaffold00002.613 0.9068728707035609 10 AMTR_s00005p00239290 Coenzyme metabolism.thiamine pyrophosphate synthesis.thiazole synthesis.biosynthetic protein (Thi4) evm_27.TU.AmTr_v1.0_scaffold00005.125 0.9059469863017691 14 AMTR_s00049p00227880 Protein biosynthesis.organelle translation machineries.translation elongation.EF-Tu elongation factor evm_27.TU.AmTr_v1.0_scaffold00049.275 0.9053763222708608 16 AMTR_s00002p00100650 evm_27.TU.AmTr_v1.0_scaffold00002.59 0.9011027191490084 39 AMTR_s00010p00264770 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa4-type component evm_27.TU.AmTr_v1.0_scaffold00010.505 0.9009339924611329 36 AMTR_s00022p00205270 Phytohormones.jasmonic acid.synthesis.13-lipoxygenase evm_27.TU.AmTr_v1.0_scaffold00022.242 0.8998733273361695 20 AMTR_s00115p00066030 Photosynthesis.photophosphorylation.chlororespiration.NADH dehydrogenase-like (NDH) complex.assembly and stabilization.protein factor CRR41 evm_27.TU.AmTr_v1.0_scaffold00115.4 0.8985839955998244 16 AMTR_s00048p00229560 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.TPT phosphometabolite transporter evm_27.TU.AmTr_v1.0_scaffold00048.224 0.8966508125424445 17 AMTR_s00007p00182110 Photosynthesis.photophosphorylation.photosystem II.LHC-related protein groups.two-helix LHC-related protein group.SEP4 protein evm_27.TU.AmTr_v1.0_scaffold00007.145 0.8948889265662577 18 AMTR_s00045p00069900 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component evm_27.TU.AmTr_v1.0_scaffold00045.58 0.8935374157181933 19 AMTR_s00018p00243310 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.Mg-protoporphyrin IX O-methyltransferase evm_27.TU.AmTr_v1.0_scaffold00018.150 0.8918847512611952 40 AMTR_s00060p00116070 Nutrient uptake.nitrogen assimilation.ammonium assimilation.glutamine synthetase evm_27.TU.AmTr_v1.0_scaffold00060.55 0.8918576496831409 50 AMTR_s00062p00189550 Cellular respiration.glycolysis.plastidial glycolysis.phosphoglycerate kinase evm_27.TU.AmTr_v1.0_scaffold00062.192 0.8915676671174988 76 AMTR_s00107p00150560 evm_27.TU.AmTr_v1.0_scaffold00107.45 0.889353875967247 34 AMTR_s00131p00114510 Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00131.86 0.8880228575522182 37 AMTR_s00009p00268360 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb6-type component evm_27.TU.AmTr_v1.0_scaffold00009.423 0.8876323859142538 49 AMTR_s00009p00163120 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.RAF1 assembly factor evm_27.TU.AmTr_v1.0_scaffold00009.90 0.8861361401439901 26 AMTR_s00106p00037610 Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00106.18 0.8849620005393373 27 AMTR_s00065p00176540 Cellular respiration.glycolysis.cytosolic glycolysis.glyceraldehyde 3-phosphate dehydrogenase activities.NADP-dependent glyceraldehyde 3-phosphate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00065.146 0.8847661963957102 38 AMTR_s00025p00126870 Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.Psb32 protein evm_27.TU.AmTr_v1.0_scaffold00025.118 0.883118370716501 97 AMTR_s00166p00060690 RNA processing.organelle machineries.RNA editing.plastidial RNA editing.CP31 RNA editing factor evm_27.TU.AmTr_v1.0_scaffold00166.36 0.88248881136268 30 AMTR_s00078p00084050 evm_27.TU.AmTr_v1.0_scaffold00078.57 0.879712363474585 84 AMTR_s00025p00246210 RNA processing.organelle machineries.ribonuclease activities.CSP41 endoribonuclease evm_27.TU.AmTr_v1.0_scaffold00025.394 0.8776105550050944 71 AMTR_s00047p00149040 Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00047.69 0.8771237570382253 33 AMTR_s00088p00153020 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component evm_27.TU.AmTr_v1.0_scaffold00088.122 0.8763938476967787 66 AMTR_s00001p00142570 Photosynthesis.photophosphorylation.Cytb6/f to PS-I electron carriers.plastocyanin evm_27.TU.AmTr_v1.0_scaffold00001.122 0.8759001195344922 64 AMTR_s00001p00181860 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00001.175 0.8753343426500059 36 AMTR_s00002p00270990 Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll metabolism.chlorophyll breakdown.chlorophyllase (CLH) evm_27.TU.AmTr_v1.0_scaffold00002.603 0.8737141161464176 37 AMTR_s00025p00060270 RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.mTERF4 splicing factor evm_27.TU.AmTr_v1.0_scaffold00025.37 0.8732812665427512 38 AMTR_s00022p00232380 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit delta evm_27.TU.AmTr_v1.0_scaffold00022.315 0.8720411314278713 91 AMTR_s00012p00254690 Protein modification.phosphorylation.TKL kinase superfamily.L-lectin kinase evm_27.TU.AmTr_v1.0_scaffold00012.280 0.8682853285615789 61 AMTR_s00048p00138890 Photosynthesis.calvin cycle.phosphoribulokinase evm_27.TU.AmTr_v1.0_scaffold00048.87 0.8674830534872905 80 AMTR_s00089p00043950 RNA biosynthesis.transcriptional activation.bHLH transcription factor evm_27.TU.AmTr_v1.0_scaffold00089.12 0.8668485575968178 42 AMTR_s00004p00044800 Ferredoxin C 1, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.27 0.8656084971317407 43 AMTR_s00058p00051650 evm_27.TU.AmTr_v1.0_scaffold00058.23 0.8647855544277436 44 AMTR_s00099p00163300 RNA biosynthesis.transcriptional activation.NAC transcription factor evm_27.TU.AmTr_v1.0_scaffold00099.164 0.8622462288179131 99 AMTR_s00061p00059490 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa3-type component evm_27.TU.AmTr_v1.0_scaffold00061.34 0.860824550117962 95 AMTR_s00032p00222720 Molybdenum cofactor sulfurase OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00032.231 0.8599609166911094 66 AMTR_s00099p00139960 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb5-type component evm_27.TU.AmTr_v1.0_scaffold00099.124 0.857763554734849 99 AMTR_s00009p00267810 Coenzyme metabolism.iron-sulfur cluster assembly machineries.plastidial SUF system.assembly phase.SUF-D component evm_27.TU.AmTr_v1.0_scaffold00009.411 0.8568618477701152 51 AMTR_s00078p00065110 Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat carboxylase/oxygenase (RuBisCo) activity.RuBisCo assembly.BSD2 assembly factor evm_27.TU.AmTr_v1.0_scaffold00078.37 0.8558498293062392 53 AMTR_s00003p00166020 Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL3 component evm_27.TU.AmTr_v1.0_scaffold00003.140 0.8555264230526087 55 AMTR_s00062p00151050 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00062.139 0.8541318450528104 58 AMTR_s00135p00117490 Lipid metabolism.fatty acid synthesis.fatty acid desaturation and elongation.fatty acid elongation.fatty acid elongation complex.KCS 3-ketoacyl-CoA synthase evm_27.TU.AmTr_v1.0_scaffold00135.68 0.8500428212734765 63 AMTR_s00062p00090380 Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS21 | mtRPS21 component evm_27.TU.AmTr_v1.0_scaffold00062.60 0.8497715257383032 64 AMTR_s00007p00193800 Photosynthesis.photophosphorylation.photosystem I.PS-I complex.component PsaK evm_27.TU.AmTr_v1.0_scaffold00007.164 0.8493315232173866 92 AMTR_s00006p00250270 Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00006.149 0.8492290042376679 66 AMTR_s00024p00238750 evm_27.TU.AmTr_v1.0_scaffold00024.272 0.8486417703258231 67 AMTR_s00067p00081240 Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.57 0.8486154469079792 76 AMTR_s00002p00266120 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbW evm_27.TU.AmTr_v1.0_scaffold00002.505 0.8480347406314112 76 AMTR_s00059p00076320 evm_27.TU.AmTr_v1.0_scaffold00059.51 0.8478651616325282 71 AMTR_s00109p00021460 BURP domain protein RD22 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00109.5 0.8450589245084607 73 AMTR_s00140p00105610 Photosynthesis.calvin cycle.NADPH-dependent malate dehydrogenase evm_27.TU.AmTr_v1.0_scaffold00140.51 0.8442018043902055 74 AMTR_s00009p00268340 Protein degradation.peptidase families.serine-type peptidase activities.LON protease evm_27.TU.AmTr_v1.0_scaffold00009.422 0.8440348455636356 75 AMTR_s00029p00134700 evm_27.TU.AmTr_v1.0_scaffold00029.153 0.8423397069411948 91 AMTR_s00037p00168570 Photosynthesis.photophosphorylation.ATP synthase complex.peripheral CF1 subcomplex.subunit gamma evm_27.TU.AmTr_v1.0_scaffold00037.79 0.8416517643639413 85 AMTR_s00081p00063880 Protein modification.phosphorylation.AGC kinase superfamily.AGC-VIII kinase evm_27.TU.AmTr_v1.0_scaffold00081.20 0.8415891221493047 82 AMTR_s00013p00180670 Photosynthesis.photophosphorylation.photosystem I.LHC-I complex.LHCa2-type component evm_27.TU.AmTr_v1.0_scaffold00013.107 0.841387842898977 94 AMTR_s00019p00244740 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00019.373 0.8389741871854953 88 AMTR_s00001p00270240 Protein translocation.chloroplast.thylakoid membrane SRP insertion system.cpSRP43 component evm_27.TU.AmTr_v1.0_scaffold00001.459 0.836811314171068 93 AMTR_s00046p00093500 Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit b_ evm_27.TU.AmTr_v1.0_scaffold00046.51 0.8345157432554773 97