Sequence Description Alias PCC hrr AMTR_s00025p00200390 RNA processing.RNA decay.exosome complex.associated co-factors.Nuclear Exosome Targeting (NEXT) activation complex.MTR4/HEN2 ATP-dependent RNA helicase evm_27.TU.AmTr_v1.0_scaffold00025.254 0.9681933462485485 1 AMTR_s00137p00063430 GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00137.24 0.9574973828130652 2 AMTR_s00037p00181430 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB activating E1 complex.small component (AXR1/AXL) evm_27.TU.AmTr_v1.0_scaffold00037.87 0.953860710628288 3 AMTR_s00090p00083520 RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp22 RNA helicase evm_27.TU.AmTr_v1.0_scaffold00090.29 0.9508926961890887 7 AMTR_s00061p00106080 evm_27.TU.AmTr_v1.0_scaffold00061.82 0.950739203861197 6 AMTR_s00083p00130670 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase evm_27.TU.AmTr_v1.0_scaffold00083.35 0.9481109517095594 25 AMTR_s00068p00178640 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS18 component evm_27.TU.AmTr_v1.0_scaffold00068.135 0.9473700278149189 7 AMTR_s00002p00271330 Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00002.622 0.9472100620328745 8 AMTR_s00019p00236090 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.A-type scaffold component evm_27.TU.AmTr_v1.0_scaffold00019.329 0.9452184863397007 9 AMTR_s00012p00197190 Protein modification.N-linked glycosylation.ALG5 dolichol-phosphate-glucose synthase evm_27.TU.AmTr_v1.0_scaffold00012.130 0.9449432707299886 10 AMTR_s00029p00164810 evm_27.TU.AmTr_v1.0_scaffold00029.213 0.9444042467722966 11 AMTR_s00111p00067270 Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen evm_27.TU.AmTr_v1.0_scaffold00111.37 0.9431205850700988 12 AMTR_s00036p00195200 Protein biosynthesis.aminoacyl-tRNA synthetase activities.phenylalanine-tRNA ligase complex.beta subunit evm_27.TU.AmTr_v1.0_scaffold00036.108 0.9421807320157604 13 AMTR_s00023p00062480 Protein modification.acetylation.NatB-type N-terminal acetylase complex.NAA25 auxiliary component evm_27.TU.AmTr_v1.0_scaffold00023.28 0.9397042706375852 37 AMTR_s00016p00133200 evm_27.TU.AmTr_v1.0_scaffold00016.91 0.9390681728253176 15 AMTR_s00010p00241770 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial glucanotransferase evm_27.TU.AmTr_v1.0_scaffold00010.311 0.9388919753313995 43 AMTR_s00037p00070040 RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor evm_27.TU.AmTr_v1.0_scaffold00037.19 0.9377600075440335 44 AMTR_s00046p00080660 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00046.35 0.9369611991882586 18 AMTR_s00059p00178020 Vesicle trafficking.target membrane tethering.Exocyst complex.SEC3 component evm_27.TU.AmTr_v1.0_scaffold00059.189 0.936932272972502 38 AMTR_s00033p00039610 Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00033.16 0.9364400963103822 31 AMTR_s00049p00011400 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00049.2 0.9357658462792692 36 AMTR_s00081p00160620 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.head module.MED17 component evm_27.TU.AmTr_v1.0_scaffold00081.69 0.9356100083419482 25 AMTR_s00048p00165310 Protein BCCIP homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.119 0.9354488790366318 23 AMTR_s00057p00150120 evm_27.TU.AmTr_v1.0_scaffold00057.136 0.9349553368390836 32 AMTR_s00048p00224070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.other.MED34 component evm_27.TU.AmTr_v1.0_scaffold00048.212 0.9345188369160708 25 AMTR_s00020p00038010 Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00020.9 0.9341638900423522 59 AMTR_s00059p00131310 Methyltransferase-like protein 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00059.108 0.9335648918752187 68 AMTR_s00180p00043090 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol-phosphate aminotransferase evm_27.TU.AmTr_v1.0_scaffold00180.22 0.933155461005972 28 AMTR_s00085p00139780 Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.MORC-type auxilary factor evm_27.TU.AmTr_v1.0_scaffold00085.89 0.9331331036845734 42 AMTR_s00004p00118340 evm_27.TU.AmTr_v1.0_scaffold00004.101 0.9331033660515705 30 AMTR_s00009p00266540 Plant intracellular Ras-group-related LRR protein 6 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00009.396 0.9329424812458703 31 AMTR_s00066p00191280 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF-QO electron transfer flavoprotein-ubiquinone oxidoreductase evm_27.TU.AmTr_v1.0_scaffold00066.244 0.932882869224148 33 AMTR_s00061p00073040 Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00061.48 0.9324628220907095 33 AMTR_s00119p00132020 Vesicle trafficking.Coat protein I (COPI) coatomer machinery.ARF-GTPase-activating (ARF-GAP) activities.class IV ARF-GAP protein evm_27.TU.AmTr_v1.0_scaffold00119.107 0.9322466020466328 34 AMTR_s00032p00225290 evm_27.TU.AmTr_v1.0_scaffold00032.241 0.9322220326841666 35 AMTR_s00101p00142180 evm_27.TU.AmTr_v1.0_scaffold00101.118 0.932162855632113 44 AMTR_s00169p00027470 Cell cycle.interphase.DNA replication.telomere replication.telomere integrity maintenance complex.CTC1 component evm_27.TU.AmTr_v1.0_scaffold00169.14 0.9319645131574849 38 AMTR_s00077p00170260 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter evm_27.TU.AmTr_v1.0_scaffold00077.187 0.9316607594619092 38 AMTR_s00106p00098180 evm_27.TU.AmTr_v1.0_scaffold00106.68 0.9314254277935438 41 AMTR_s00048p00132040 RAN GTPase-activating protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.77 0.9313160332516607 40 AMTR_s00041p00138020 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP160 scaffold nucleoporin evm_27.TU.AmTr_v1.0_scaffold00041.97 0.9300013077978821 42 AMTR_s00045p00163960 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.RPAP3 polymerase- II regulator protein evm_27.TU.AmTr_v1.0_scaffold00045.188 0.9299576587042653 48 AMTR_s00067p00129330 Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00067.111 0.9293513543987941 44 AMTR_s00096p00135790 evm_27.TU.AmTr_v1.0_scaffold00096.86 0.9291139604897056 45 AMTR_s00001p00199010 evm_27.TU.AmTr_v1.0_scaffold00001.198 0.929095763235911 46 AMTR_s00002p00268330 Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase) evm_27.TU.AmTr_v1.0_scaffold00002.535 0.9289834541028389 72 AMTR_s00060p00170530 evm_27.TU.AmTr_v1.0_scaffold00060.107 0.9287795148894116 49 AMTR_s00004p00115360 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.98 0.9284588162767679 84 AMTR_s00103p00089080 Protein degradation.peptidase families.metallopeptidase activities.M16 families.Nardilysin-like peptidase evm_27.TU.AmTr_v1.0_scaffold00103.49 0.9280267679093831 51 AMTR_s00002p00135270 Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase evm_27.TU.AmTr_v1.0_scaffold00002.98 0.9278962601197941 52 AMTR_s00044p00041520 evm_27.TU.AmTr_v1.0_scaffold00044.15 0.9277126046596847 60 AMTR_s00065p00048130 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00065.24 0.9274307152872694 75 AMTR_s00007p00224640 GTP-binding protein At2g22870 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.219 0.9273317050743626 55 AMTR_s00019p00204140 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS52/POK component evm_27.TU.AmTr_v1.0_scaffold00019.240 0.9271461695549483 56 AMTR_s00032p00190520 Protein degradation.ER-associated protein degradation (ERAD) machinery.PNG1 peptide:N-glycanase evm_27.TU.AmTr_v1.0_scaffold00032.172 0.9266671729624651 57 AMTR_s00066p00163770 evm_27.TU.AmTr_v1.0_scaffold00066.177 0.9265198987631266 58 AMTR_s00002p00261540 DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00002.453 0.9265183337379798 71 AMTR_s00025p00060820 Protein degradation.peptide tagging.Related-to-Ubiquitin (RUB/NEDD8)-anchor modification (neddylation).RUB activating E1 complex.large component (ECR1) evm_27.TU.AmTr_v1.0_scaffold00025.39 0.9262848880862184 60 AMTR_s00009p00265260 evm_27.TU.AmTr_v1.0_scaffold00009.380 0.9260715194145543 61 AMTR_s00004p00135010 Cold shock protein 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00004.130 0.925866387008658 62 AMTR_s00009p00251110 Protein degradation.peptidase families.serine-type peptidase activities.subtilisin-type protease families.SBT6.2 protease evm_27.TU.AmTr_v1.0_scaffold00009.258 0.925803632662506 81 AMTR_s00002p00262620 evm_27.TU.AmTr_v1.0_scaffold00002.463 0.9256287003093819 64 AMTR_s00034p00133850 evm_27.TU.AmTr_v1.0_scaffold00034.40 0.925604408044206 65 AMTR_s00040p00179700 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst evm_27.TU.AmTr_v1.0_scaffold00040.171 0.925570545174438 66 AMTR_s00171p00062850 evm_27.TU.AmTr_v1.0_scaffold00171.47 0.9255332677326136 67 AMTR_s00049p00115800 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component evm_27.TU.AmTr_v1.0_scaffold00049.91 0.925370079936395 81 AMTR_s00101p00084550 RNA processing.RNA 3-end polyadenylation.Cleavage Stimulatory Factor (CstF) complex.CstF77/Rna14 component evm_27.TU.AmTr_v1.0_scaffold00101.61 0.9250345114429214 79 AMTR_s00165p00033420 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00165.18 0.9250077046994462 70 AMTR_s00002p00267140 Protein modification.protein folding and quality control.N-glycan-dependent machinery.MNL alpha-1,2 exomannosidase evm_27.TU.AmTr_v1.0_scaffold00002.520 0.9247855886499348 71 AMTR_s00048p00073770 evm_27.TU.AmTr_v1.0_scaffold00048.33 0.92472959531111 72 AMTR_s00025p00131930 evm_27.TU.AmTr_v1.0_scaffold00025.131 0.9246322867500374 73 AMTR_s00055p00187070 Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.116 0.9245240270297974 74 AMTR_s00059p00193620 Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase evm_27.TU.AmTr_v1.0_scaffold00059.214 0.9240782758872623 76 AMTR_s00040p00182290 Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.HDA9-PWR deacetylation complex.HDA9 component evm_27.TU.AmTr_v1.0_scaffold00040.176 0.9239004876256603 76 AMTR_s00146p00077810 Protein modification.phosphorylation.STE kinase superfamily.MAPKK kinase evm_27.TU.AmTr_v1.0_scaffold00146.45 0.9238799422400027 77 AMTR_s00147p00050220 Cytoskeleton.microtubular network.microtubule dynamics.WDL microtubule-stabilizing factor evm_27.TU.AmTr_v1.0_scaffold00147.18 0.9237668036486641 78 AMTR_s00090p00135570 RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.TAF6 component evm_27.TU.AmTr_v1.0_scaffold00090.68 0.9236622329246016 79 AMTR_s00032p00063530 evm_27.TU.AmTr_v1.0_scaffold00032.40 0.9233022003634421 84 AMTR_s00069p00204310 evm_27.TU.AmTr_v1.0_scaffold00069.223 0.9232381744218935 81 AMTR_s00010p00181420 RNA biosynthesis.organelle machineries.transcription.mTERF transcription factor evm_27.TU.AmTr_v1.0_scaffold00010.153 0.9227396256727377 82 AMTR_s00177p00032620 Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00177.11 0.9225852271040117 83 AMTR_s00009p00247750 RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.CPSF100/Ydh1 component evm_27.TU.AmTr_v1.0_scaffold00009.244 0.9225326288070091 98 AMTR_s00144p00039220 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase evm_27.TU.AmTr_v1.0_scaffold00144.13 0.9224926422622025 85 AMTR_s00025p00208510 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN13 regulatory component evm_27.TU.AmTr_v1.0_scaffold00025.272 0.9219911242749046 86 AMTR_s00016p00180540 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT2 component evm_27.TU.AmTr_v1.0_scaffold00016.142 0.921983135819259 90 AMTR_s00092p00062310 Coenzyme metabolism.NAD/NADP biosynthesis.NAD synthase evm_27.TU.AmTr_v1.0_scaffold00092.27 0.9219550230069398 88 AMTR_s00044p00170650 evm_27.TU.AmTr_v1.0_scaffold00044.189 0.9219065277181729 89 AMTR_s00022p00045270 evm_27.TU.AmTr_v1.0_scaffold00022.25 0.9218748983163437 90 AMTR_s00006p00149820 Cell cycle.interphase.DNA replication.preinitiation.origin recognition complex.ORC4 component evm_27.TU.AmTr_v1.0_scaffold00006.57 0.9214745586545159 91 AMTR_s00102p00018040 DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1) evm_27.TU.AmTr_v1.0_scaffold00102.3 0.9212780144822877 92 AMTR_s00025p00182750 RNA biosynthesis.rRNA biogenesis.NOF1 control factor evm_27.TU.AmTr_v1.0_scaffold00025.222 0.9210286740205365 93 AMTR_s00163p00014030 Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00163.1 0.92074830187976 94 AMTR_s00072p00067600 Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00072.29 0.9207053072872102 95 AMTR_s00131p00060240 DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica evm_27.TU.AmTr_v1.0_scaffold00131.35 0.9206216060897126 96 AMTR_s00055p00041510 Histidine kinase 1 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00055.12 0.9203494890587779 99 AMTR_s00025p00243690 Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase evm_27.TU.AmTr_v1.0_scaffold00025.377 0.9202435000644721 98 AMTR_s00025p00221330 evm_27.TU.AmTr_v1.0_scaffold00025.310 0.9202249072845126 99 AMTR_s00119p00089670 Vesicle trafficking.target membrane tethering.Golgi membrane tethering factors.GC6-type golgin evm_27.TU.AmTr_v1.0_scaffold00119.69 0.9201366662569512 100